Factsheet for Os03t0753100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37536	Sorghum	nucleus	81.59	80.91
Zm00001d034047_P007	Maize	nucleus	79.5	79.17
TraesCS5D01G401700.1	Wheat	nucleus	77.82	78.81
HORVU5Hr1G095710.1	Barley	nucleus	76.99	77.64
TraesCS5B01G396700.1	Wheat	nucleus	76.15	77.12
TraesCS5A01G391800.1	Wheat	nucleus	76.57	76.89
Os06t0162800-01	Rice	nucleus	49.79	52.89
Solyc12g038510.1.1	Tomato	nucleus	54.81	52.4
Os03t0215400-01	Rice	nucleus	53.14	49.42
Os09t0507200-01	Rice	nucleus	48.12	46.37
Os08t0531700-01	Rice	nucleus	47.28	45.38
Os08t0431900-00	Rice	nucleus	30.13	45.28
Os02t0682200-01	Rice	nucleus	46.86	44.8
Os06t0347700-00	Rice	nucleus	26.78	43.54
Os03t0752800-02	Rice	nucleus	44.35	43.09
Os04t0580700-01	Rice	nucleus	44.35	41.73
Os07t0605200-01	Rice	nucleus	41.84	40.16
Os07t0108900-02	Rice	nucleus	41.0	36.7
Os02t0579600-00	Rice	nucleus	33.47	33.33
Os02t0731200-01	Rice	nucleus	33.47	33.2
Os04t0304400-01	Rice	nucleus	30.96	32.6
Os05t0203800-02	Rice	nucleus	36.4	31.99
Os12t0501700-00	Rice	nucleus	30.54	31.33
Os01t0886200-01	Rice	nucleus	33.47	30.19
Os12t0207000-01	Rice	nucleus	33.05	29.26
Os01t0201700-02	Rice	nucleus	33.47	28.99

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:4334141	ProteinID:AAM34397.1	ProteinID:AAP68366.1	ProteinID:AAR87238.1
EMBL:AB003324	ProteinID:ABF98926.1	EMBL:AY551917	EMBL:AY551922	EMBL:AY551926	ProteinID:BAF13215.1
ProteinID:BAS86430.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os03g0753100	EnsemblPlants:Os03t0753100-01	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF162
UniProt:Q6Q9H6	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI00000AD082	RefSeq:XP_015631035.1	SEG:seg	:	:	:

Description

PANICLE PHYTOMER2MADS-box transcription factor, Inflorescence and spikelet development (Os03t0753100-01)

Coordinates

chr3:-:31048351..31055017

Molecular Weight (calculated)

26882.1 Da

IEP (calculated)

7.552

GRAVY (calculated)

-0.581

Length

239 amino acids

Sequence
(BLAST)

001: MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS SNMLKTLERY QRYIYASQDA AAPTSDEMQN NYQEYVNLKA
101: HVEILQQSQR NLLGEDLAPL ATNELEQLES QVVRTLKQIR SRKTQVLLDE LCDLKRKEQM LQDANRVLKR KLDEIDVEAA PPQPPWNGNC SNGHGGGGGV
201: FSSEPPQPEH FFQALGLHAV DVNQPPAPPP GGYPPEWMA

Best Arabidopsis Sequence Match ( AT5G15800.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L

Arabidopsis Description

SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.