Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0431900-00 | Rice | nucleus | 61.22 | 56.6 |
| TraesCS1A01G045000.1 | Wheat | nucleus | 72.11 | 53.54 |
| TraesCS1B01G058200.1 | Wheat | nucleus | 70.75 | 46.64 |
| TraesCS1D01G045700.1 | Wheat | nucleus | 74.15 | 46.19 |
| TraesCS1B01G058300.1 | Wheat | nucleus | 72.79 | 45.34 |
| TraesCS1B01G058100.1 | Wheat | nucleus | 74.15 | 44.86 |
| TraesCS1A01G044900.1 | Wheat | nucleus | 73.47 | 44.44 |
| HORVU1Hr1G008290.4 | Barley | nucleus | 72.11 | 44.17 |
| TraesCS1D01G045500.1 | Wheat | nucleus | 72.11 | 43.62 |
| TraesCS1D01G045600.1 | Wheat | nucleus | 68.71 | 43.16 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 64.63 | 38.93 |
| Os02t0579600-00 | Rice | nucleus | 61.9 | 37.92 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 38.1 | 37.84 |
| CDX72465 | Canola | nucleus | 61.22 | 37.5 |
| CDY49287 | Canola | nucleus | 61.22 | 37.5 |
| Bra017638.1-P | Field mustard | nucleus | 61.22 | 37.5 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 59.18 | 37.02 |
| HORVU1Hr1G008300.3 | Barley | nucleus | 71.43 | 36.97 |
| AT3G57230.1 | Thale cress | nucleus | 59.18 | 36.25 |
| CDX69036 | Canola | nucleus | 59.18 | 36.25 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 59.86 | 35.92 |
| CDX75412 | Canola | nucleus | 58.5 | 35.83 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 57.14 | 35.59 |
| Os02t0731200-01 | Rice | nucleus | 57.82 | 35.27 |
| Os04t0304400-01 | Rice | nucleus | 54.42 | 35.24 |
| KRH42047 | Soybean | nucleus | 55.78 | 34.02 |
| Os06t0162800-01 | Rice | nucleus | 43.54 | 28.44 |
| Bra011509.1-P | Field mustard | nucleus | 53.06 | 26.9 |
| Os03t0753100-01 | Rice | nucleus | 43.54 | 26.78 |
| Os07t0605200-01 | Rice | nucleus | 44.9 | 26.51 |
| Os01t0886200-01 | Rice | nucleus | 46.26 | 25.66 |
| Os05t0203800-02 | Rice | nucleus | 45.58 | 24.63 |
| Os12t0501700-00 | Rice | nucleus | 38.78 | 24.46 |
| Os04t0580700-01 | Rice | nucleus | 42.18 | 24.41 |
| Os02t0682200-01 | Rice | nucleus | 41.5 | 24.4 |
| Os03t0752800-02 | Rice | nucleus | 40.82 | 24.39 |
| Os03t0215400-01 | Rice | nucleus | 42.18 | 24.12 |
| Os08t0531700-01 | Rice | nucleus | 40.82 | 24.1 |
| Os09t0507200-01 | Rice | nucleus | 39.46 | 23.39 |
| Os12t0207000-01 | Rice | nucleus | 42.18 | 22.96 |
| Os01t0201700-02 | Rice | nucleus | 42.86 | 22.83 |
| Os07t0108900-02 | Rice | nucleus | 40.82 | 22.47 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A0P0WWA7 | ProteinID:BAS97660.1 | ncoils:Coil | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os06g0347700 |
| EnsemblPlants:Os06t0347700-00 | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000393950E | : | : | : |
Description
MADS BOX GENE 59Transcription factor, MADS-box domain containing protein. (Os06t0347700-00)
Coordinates
chr6:+:13996413..14009042
Molecular Weight (calculated)
16799.2 Da
IEP (calculated)
10.373
GRAVY (calculated)
-0.454
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTVISR IENTTSRQVT FSKRRSGLFK KAKELAILCD AQVGVLVFSS TGRLYDYSNS SMRSVIERYQ QIKDGQQLMS ASTEAKFWQA EAERLKQQLH
101: NLEGSQRQLL AHDLSGLEWN DLKSLENQLE TSLHNVRLKK VILTLSL
101: NLEGSQRQLL AHDLSGLEWN DLKSLENQLE TSLHNVRLKK VILTLSL
001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KVLML
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KVLML
Arabidopsis Description
AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.