Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75412 | Canola | nucleus | 97.5 | 97.5 |
| CDX72465 | Canola | nucleus | 86.67 | 86.67 |
| CDY49287 | Canola | nucleus | 86.67 | 86.67 |
| AT3G57230.1 | Thale cress | nucleus | 86.25 | 86.25 |
| Bra011509.1-P | Field mustard | nucleus | 91.67 | 75.86 |
| Zm00001d003409_P001 | Maize | nucleus | 25.83 | 71.26 |
| CDY48451 | Canola | nucleus | 42.08 | 66.01 |
| Os08t0431900-00 | Rice | nucleus | 43.33 | 65.41 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 64.17 | 63.11 |
| TraesCS7D01G107200.1 | Wheat | nucleus | 25.0 | 61.86 |
| TraesCSU01G209900.1 | Wheat | nucleus | 24.58 | 60.82 |
| CDX90394 | Canola | nucleus | 57.92 | 60.7 |
| CDX69345 | Canola | nucleus | 57.08 | 60.35 |
| OQU85202 | Sorghum | nucleus | 60.0 | 60.0 |
| CDX75686 | Canola | nucleus | 56.67 | 59.39 |
| Os06t0347700-00 | Rice | nucleus | 36.25 | 59.18 |
| Os02t0579600-00 | Rice | nucleus | 59.17 | 59.17 |
| Zm00001d016957_P003 | Maize | nucleus | 58.75 | 58.75 |
| TraesCS2A01G337900.1 | Wheat | nucleus | 57.5 | 57.5 |
| TraesCS2D01G325000.1 | Wheat | nucleus | 57.5 | 57.5 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 58.33 | 57.14 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 55.83 | 57.02 |
| CDY25613 | Canola | nucleus | 54.17 | 57.02 |
| TraesCS2B01G344000.1 | Wheat | nucleus | 56.67 | 56.67 |
| OQU81712 | Sorghum | nucleus | 55.83 | 56.07 |
| Os02t0731200-01 | Rice | nucleus | 56.25 | 56.02 |
| CDY72391 | Canola | nucleus | 17.5 | 56.0 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 55.0 | 55.93 |
| CDX89496 | Canola | nucleus | 53.33 | 55.9 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 15.42 | 55.22 |
| OQU80503 | Sorghum | nucleus | 52.5 | 55.02 |
| OQU85464 | Sorghum | nucleus | 55.0 | 54.55 |
| HORVU6Hr1G073040.2 | Barley | nucleus | 54.58 | 54.36 |
| TraesCS6B01G322700.2 | Wheat | nucleus | 54.58 | 54.36 |
| TraesCS6A01G292300.2 | Wheat | nucleus | 54.17 | 53.94 |
| TraesCS6D01G273500.2 | Wheat | nucleus | 54.17 | 53.94 |
| Os04t0304400-01 | Rice | nucleus | 50.83 | 53.74 |
| HORVU5Hr1G000370.3 | Barley | nucleus | 46.25 | 53.62 |
| Zm00001d017932_P002 | Maize | nucleus | 52.5 | 53.39 |
| TraesCS5B01G002400.1 | Wheat | nucleus | 50.0 | 51.72 |
| TraesCS1A01G045000.1 | Wheat | nucleus | 42.5 | 51.52 |
| HORVU7Hr1G023940.2 | Barley | nucleus | 48.33 | 50.43 |
| TraesCS7B01G009800.1 | Wheat | nucleus | 48.33 | 50.43 |
| TraesCS5D01G002200.2 | Wheat | nucleus | 48.75 | 50.21 |
| TraesCS7A01G111900.1 | Wheat | nucleus | 47.92 | 50.0 |
| TraesCS7B01G009500.1 | Wheat | nucleus | 47.92 | 50.0 |
| TraesCS7A01G111800.1 | Wheat | nucleus | 47.5 | 49.57 |
| TraesCS7D01G106600.1 | Wheat | nucleus | 47.5 | 49.57 |
| TraesCS7D01G106900.1 | Wheat | nucleus | 47.5 | 49.57 |
| CDX79856 | Canola | nucleus | 18.33 | 49.44 |
| TraesCS1D01G045700.1 | Wheat | nucleus | 46.67 | 47.46 |
| KRH42047 | Soybean | nucleus | 47.5 | 47.3 |
| TraesCS7A01G111700.1 | Wheat | nucleus | 46.67 | 47.06 |
| TraesCS1B01G058300.1 | Wheat | nucleus | 45.42 | 46.19 |
| TraesCS1A01G044900.1 | Wheat | nucleus | 46.67 | 46.09 |
| TraesCS1B01G058100.1 | Wheat | nucleus | 46.67 | 46.09 |
| TraesCS1B01G058200.1 | Wheat | nucleus | 42.5 | 45.74 |
| TraesCS1D01G045500.1 | Wheat | nucleus | 46.25 | 45.68 |
| HORVU7Hr1G024000.2 | Barley | nucleus | 50.42 | 45.32 |
| CDX71922 | Canola | nucleus | 25.42 | 45.19 |
| HORVU2Hr1G080490.1 | Barley | nucleus, plastid | 57.5 | 45.1 |
| TraesCS1D01G045600.1 | Wheat | nucleus | 43.75 | 44.87 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 27.5 | 44.59 |
| HORVU1Hr1G008290.4 | Barley | nucleus | 43.75 | 43.75 |
| CDY19977 | Canola | nucleus | 17.92 | 42.16 |
| Zm00001d050897_P002 | Maize | nucleus | 55.42 | 42.09 |
| HORVU1Hr1G008300.3 | Barley | nucleus | 47.5 | 40.14 |
| CDX71166 | Canola | nucleus | 52.08 | 35.92 |
| CDX90741 | Canola | nucleus | 33.75 | 35.06 |
| CDY47002 | Canola | nucleus | 33.33 | 33.2 |
| CDY36077 | Canola | nucleus | 30.42 | 33.03 |
| CDY34564 | Canola | nucleus | 30.0 | 33.03 |
| CDX98597 | Canola | nucleus | 34.17 | 32.67 |
| CDY09267 | Canola | nucleus | 33.75 | 32.53 |
| CDY57524 | Canola | nucleus | 33.75 | 32.4 |
| CDX79857 | Canola | nucleus | 32.92 | 32.38 |
| CDY26462 | Canola | nucleus | 34.17 | 32.28 |
| CDX98330 | Canola | nucleus | 33.33 | 32.26 |
| CDX78909 | Canola | nucleus | 33.75 | 32.14 |
| CDY34718 | Canola | nucleus | 33.75 | 32.14 |
| CDY42841 | Canola | nucleus | 32.08 | 32.08 |
| CDY43239 | Canola | nucleus | 33.33 | 32.0 |
| CDY58690 | Canola | nucleus | 32.08 | 31.95 |
| CDX84935 | Canola | nucleus | 33.33 | 31.87 |
| CDY18911 | Canola | nucleus | 31.25 | 31.65 |
| CDY27603 | Canola | nucleus | 33.33 | 31.62 |
| CDY02185 | Canola | nucleus | 31.67 | 31.54 |
| CDY16832 | Canola | nucleus | 31.67 | 31.54 |
| CDY15724 | Canola | nucleus | 32.92 | 31.35 |
| CDX78653 | Canola | nucleus | 33.75 | 31.27 |
| CDX70651 | Canola | nucleus | 33.33 | 30.89 |
| CDY18912 | Canola | nucleus | 30.83 | 30.71 |
| CDX69499 | Canola | nucleus | 33.75 | 30.68 |
| CDY11824 | Canola | nucleus | 31.25 | 30.61 |
| CDY66153 | Canola | nucleus | 31.25 | 30.61 |
| CDY49254 | Canola | nucleus | 34.58 | 30.18 |
| CDX86353 | Canola | nucleus | 31.25 | 30.12 |
| CDX74754 | Canola | nucleus | 31.67 | 29.69 |
| CDY53885 | Canola | nucleus | 31.67 | 29.57 |
| CDY03905 | Canola | nucleus | 32.92 | 29.26 |
| CDY00082 | Canola | nucleus | 30.0 | 29.03 |
| CDY65811 | Canola | nucleus | 30.83 | 28.91 |
| CDX89097 | Canola | nucleus | 29.58 | 28.86 |
| CDY02978 | Canola | nucleus | 30.42 | 28.52 |
| CDY45899 | Canola | nucleus | 29.58 | 28.51 |
| CDY65347 | Canola | nucleus | 18.75 | 28.48 |
| CDY04164 | Canola | nucleus | 30.42 | 28.29 |
| CDY51202 | Canola | nucleus | 30.0 | 28.02 |
| CDX89005 | Canola | nucleus | 32.08 | 27.9 |
| CDX95960 | Canola | nucleus | 29.58 | 27.73 |
| CDY33554 | Canola | nucleus | 29.58 | 27.73 |
| CDY00589 | Canola | nucleus | 31.67 | 27.64 |
| CDY60297 | Canola | nucleus | 31.67 | 26.03 |
| CDY04265 | Canola | nucleus | 30.0 | 25.99 |
| CDX99406 | Canola | nucleus | 33.75 | 25.96 |
| CDY07357 | Canola | nucleus | 30.0 | 24.91 |
| CDY33113 | Canola | nucleus | 30.42 | 23.62 |
| CDX67765 | Canola | nucleus | 33.75 | 23.28 |
| CDX85287 | Canola | nucleus | 16.67 | 21.39 |
| CDY13236 | Canola | mitochondrion | 17.5 | 20.9 |
| CDY42485 | Canola | nucleus | 31.25 | 19.84 |
| CDY71878 | Canola | endoplasmic reticulum | 20.83 | 19.01 |
| CDY45709 | Canola | nucleus | 12.92 | 17.92 |
| CDY49686 | Canola | nucleus | 12.92 | 17.92 |
| CDY01574 | Canola | nucleus | 9.17 | 17.89 |
| CDY35780 | Canola | nucleus | 14.58 | 17.77 |
| CDY65346 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078BW58 | EnsemblPlants:CDX69036 | ProteinID:CDX69036 | ProteinID:CDX69036.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00130794001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EB27A3 | : | : | : |
Description
BnaC01g04170D
Coordinates
chrLK031789:-:2587197..2590307
Molecular Weight (calculated)
27544.1 Da
IEP (calculated)
7.028
GRAVY (calculated)
-0.586
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIAIKR IDNATSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYEFSSS SMKSIIDRYS EAKCETSSEI NPALEIKFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EDLQKLENQL ELSLHDVRMK KDQMLLEEIQ ELNREGNLLH QENLDLHEKL NLMRQQNMEL HKKVSEVEGV KSSEKISLLT
201: NGLGMRDNSS EHVHLQLSQP LQHDETPSKA IQLSYFSFIS
101: HNLQENHRQM MGEELSGLSV EDLQKLENQL ELSLHDVRMK KDQMLLEEIQ ELNREGNLLH QENLDLHEKL NLMRQQNMEL HKKVSEVEGV KSSEKISLLT
201: NGLGMRDNSS EHVHLQLSQP LQHDETPSKA IQLSYFSFIS
001: MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS SMKSVIERYS DAKGETSSEN DPASEIQFWQ KEAAILKRQL
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
101: HNLQENHRQM MGEELSGLSV EALQNLENQL ELSLRGVRMK KDQMLIEEIQ VLNREGNLVH QENLDLHKKV NLMHQQNMEL HEKVSEVEGV KIANKNSLLT
201: NGLDMRDTSN EHVHLQLSQP QHDHETHSKA IQLNYFSFIA
Arabidopsis Description
AGL16Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.