CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69036
CDX69345
CDX72465
CDX74755
CDX75412
CDX75686
CDX90394
CDY25046
CDY27368
CDY37054
CDY49287
CDY50584
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	CDY25046	AT1G48150.1	15805477
AT1G71692.1	CDY50584	AT1G48150.1	15805477
AT1G71692.1	CDX74755	AT2G45660.1	15805477
AT1G71692.1	CDY27368	AT2G45660.1	15805477
AT1G71692.1	CDY37054	AT2G45660.1	15805477
AT1G71692.1	CDY53886	AT2G45660.1	15805477
AT1G71692.1	CDY60689	AT2G45660.1	15805477
AT1G71692.1	CDY69077	AT2G45660.1	15805477
AT1G71692.1	CDX69036	AT3G57230.1	15805477
AT1G71692.1	CDX72465	AT3G57230.1	15805477
AT1G71692.1	CDX75412	AT3G57230.1	15805477
AT1G71692.1	CDY49287	AT3G57230.1	15805477
AT1G71692.1	CDX69345	AT4G37940.1	15805477
AT1G71692.1	CDX75686	AT4G37940.1	15805477
AT1G71692.1	CDX90394	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03698	Canola	mitochondrion, nucleus	98.58	98.58
Bra007972.1-P	Field mustard	nucleus	98.1	98.1
AT1G71692.1	Thale cress	nucleus	91.94	91.94
CDX96334	Canola	nucleus	91.94	91.08
CDX72816	Canola	mitochondrion, nucleus	83.41	87.13
CDY36686	Canola	mitochondrion, nucleus	81.99	81.99
VIT_18s0041g02140.t01	Wine grape	nucleus	59.24	63.13
KRH39983	Soybean	nucleus	60.66	63.05
PGSC0003DMT400048352	Potato	nucleus	33.18	60.34
KRH23802	Soybean	nucleus	57.82	59.8
Solyc11g032100.1.1	Tomato	nucleus	55.92	58.71
PGSC0003DMT400048353	Potato	nucleus	19.91	51.22
GSMUA_Achr7P02960_001	Banana	nucleus	56.87	50.63
GSMUA_Achr11P...	Banana	nucleus	53.55	50.45
Os12t0206800-00	Rice	nucleus	47.87	50.0
EES13239	Sorghum	mitochondrion, nucleus	52.61	50.0
TraesCS2D01G309300.1	Wheat	nucleus	47.87	50.0
TraesCS2A01G311100.1	Wheat	nucleus	47.87	50.0
Zm00001d025479_P001	Maize	nucleus	45.97	48.74
KXG26379	Sorghum	nucleus	46.92	48.29
Os08t0112700-01	Rice	nucleus	50.71	48.2
TraesCS7A01G319400.2	Wheat	mitochondrion, nucleus	51.18	47.16
TraesCS7D01G315900.1	Wheat	mitochondrion, nucleus	51.66	46.98
HORVU7Hr1G076310.14	Barley	mitochondrion, nucleus	51.18	46.96
Zm00001d035053_P002	Maize	nucleus	42.18	45.41
OQU78925	Sorghum	nucleus	44.55	43.52
Zm00001d049692_P001	Maize	nucleus	49.29	39.54
TraesCS1B01G467500.1	Wheat	nucleus	1.42	3.06

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078HJA0	UniProt:A0A078HJA0	EnsemblPlants:CDY37947	ProteinID:CDY37947
ProteinID:CDY37947.1	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00064974001	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF152	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EE43C7	SEG:seg	:

Description

BnaC02g20640DBnaC02g20640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJA0]

Coordinates

chrLK032412:-:258036..265845

Molecular Weight (calculated)

23919.3 Da

IEP (calculated)

8.458

GRAVY (calculated)

-0.312

Length

211 amino acids

Sequence
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELAAK GTMDGIIDKY MKCTGGGRGS SSAIFTAQEQ LQPPNLEPKD
101: EVNVLKREIE MLQKGIRYMF GGGDGAMNLE ELLLLEKHLE FWISQIRSAK MEIMLQEIQS LRNKEGVLKN ANKFLLEKIE ENNNSILDAN FTTVDTNYSY
201: PLTMPSEIFQ F

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.