Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_00s0211g00180.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G71692.1 | VIT_00s0211g00180.t01 | AT4G37940.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016128.1-P | Field mustard | nucleus | 26.77 | 85.48 |
| PGSC0003DMT400048352 | Potato | nucleus | 43.94 | 75.0 |
| Solyc11g032100.1.1 | Tomato | nucleus | 74.75 | 73.63 |
| PGSC0003DMT400048353 | Potato | nucleus | 27.78 | 67.07 |
| KRH23802 | Soybean | nucleus | 67.68 | 65.69 |
| KRH39983 | Soybean | nucleus | 64.65 | 63.05 |
| Bra007972.1-P | Field mustard | nucleus | 64.14 | 60.19 |
| CDY03698 | Canola | mitochondrion, nucleus | 64.14 | 60.19 |
| CDX72816 | Canola | mitochondrion, nucleus | 60.61 | 59.41 |
| AT1G71692.1 | Thale cress | nucleus | 63.13 | 59.24 |
| CDY37947 | Canola | nucleus | 63.13 | 59.24 |
| CDX96334 | Canola | nucleus | 62.63 | 58.22 |
| Bra003919.1-P | Field mustard | nucleus | 61.62 | 57.55 |
| TraesCS2A01G311100.1 | Wheat | nucleus | 55.56 | 54.46 |
| TraesCS2D01G309300.1 | Wheat | nucleus | 55.56 | 54.46 |
| Os12t0206800-00 | Rice | nucleus | 55.05 | 53.96 |
| Os08t0112700-01 | Rice | nucleus | 60.1 | 53.6 |
| GSMUA_Achr11P... | Banana | nucleus | 60.1 | 53.12 |
| GSMUA_Achr7P02960_001 | Banana | nucleus | 63.13 | 52.74 |
| CDY36686 | Canola | mitochondrion, nucleus | 56.06 | 52.61 |
| HORVU7Hr1G076310.14 | Barley | mitochondrion, nucleus | 59.6 | 51.3 |
| Zm00001d025479_P001 | Maize | nucleus | 51.52 | 51.26 |
| TraesCS7A01G319400.2 | Wheat | mitochondrion, nucleus | 59.09 | 51.09 |
| EES13239 | Sorghum | mitochondrion, nucleus | 57.07 | 50.9 |
| TraesCS7D01G315900.1 | Wheat | mitochondrion, nucleus | 59.6 | 50.86 |
| Bra016129.1-P | Field mustard | nucleus | 23.74 | 50.0 |
| KXG26379 | Sorghum | nucleus | 50.0 | 48.29 |
| OQU78925 | Sorghum | nucleus | 51.01 | 46.76 |
| Zm00001d035053_P002 | Maize | nucleus | 45.96 | 46.43 |
| Zm00001d049692_P001 | Maize | nucleus | 57.07 | 42.97 |
| TraesCS1B01G467500.1 | Wheat | nucleus | 3.03 | 6.12 |
Protein Annotations
| EntrezGene:100253426 | wikigene:100253426 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:CBI39226 | ProteinID:CBI39226.3 |
| ncoils:Coil | UniProt:D7U912 | EMBL:FN596744 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | EntrezGene:LOC100253426 | wikigene:LOC100253426 | InterPro:MADS_MEF2-like | PFAM:PF00319 |
| PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF152 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00015C9FCC |
| ArrayExpress:VIT_18s0041g02140 | EnsemblPlantsGene:VIT_18s0041g02140 | EnsemblPlants:VIT_18s0041g02140.t01 | RefSeq:XP_002278239 | RefSeq:XP_002278239.1 | : |
Description
No Description!
Coordinates
chr18:+:27268849..27284583
Molecular Weight (calculated)
22652.9 Da
IEP (calculated)
8.071
GRAVY (calculated)
-0.326
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGIFIFSA HGKLYELATK GTMQGLIEKY MKSSCGSQDD QAKEAQLLDT KEEINMLKHE
101: IELLQKGLRY MLGGGAGTMT LDELHIFEKH LEIWIYNIRS AKMEIMFQEI QLLKNKEGIL KAANNYLQEM IDDQTGITNI APMINPYPLT TQNEIFQT
101: IELLQKGLRY MLGGGAGTMT LDELHIFEKH LEIWIYNIRS AKMEIMFQEI QLLKNKEGIL KAANNYLQEM IDDQTGITNI APMINPYPLT TQNEIFQT
001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F
Arabidopsis Description
AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.