CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69036
CDX69345
CDX72465
CDX74755
CDX75412
CDX75686
CDX90394
CDY25046
CDY27368
CDY37054
CDY49287
CDY50584
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	CDY25046	AT1G48150.1	15805477
AT1G71692.1	CDY50584	AT1G48150.1	15805477
AT1G71692.1	CDX74755	AT2G45660.1	15805477
AT1G71692.1	CDY27368	AT2G45660.1	15805477
AT1G71692.1	CDY37054	AT2G45660.1	15805477
AT1G71692.1	CDY53886	AT2G45660.1	15805477
AT1G71692.1	CDY60689	AT2G45660.1	15805477
AT1G71692.1	CDY69077	AT2G45660.1	15805477
AT1G71692.1	CDX69036	AT3G57230.1	15805477
AT1G71692.1	CDX72465	AT3G57230.1	15805477
AT1G71692.1	CDX75412	AT3G57230.1	15805477
AT1G71692.1	CDY49287	AT3G57230.1	15805477
AT1G71692.1	CDX69345	AT4G37940.1	15805477
AT1G71692.1	CDX75686	AT4G37940.1	15805477
AT1G71692.1	CDX90394	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96334	Canola	nucleus	93.56	88.73
CDY03698	Canola	mitochondrion, nucleus	88.61	84.83
AT1G71692.1	Thale cress	nucleus	88.12	84.36
CDY37947	Canola	nucleus	87.13	83.41
CDY36686	Canola	mitochondrion, nucleus	76.73	73.46
KRH39983	Soybean	nucleus	63.86	63.55
PGSC0003DMT400048352	Potato	nucleus	35.64	62.07
Solyc11g032100.1.1	Tomato	nucleus	60.4	60.7
VIT_18s0041g02140.t01	Wine grape	nucleus	59.41	60.61
KRH23802	Soybean	nucleus	60.4	59.8
PGSC0003DMT400048353	Potato	nucleus	21.78	53.66
GSMUA_Achr11P...	Banana	nucleus	53.96	48.66
TraesCS2D01G309300.1	Wheat	nucleus	48.51	48.51
Os12t0206800-00	Rice	nucleus	48.51	48.51
TraesCS2A01G311100.1	Wheat	nucleus	48.51	48.51
EES13239	Sorghum	mitochondrion, nucleus	52.97	48.2
Zm00001d025479_P001	Maize	nucleus	47.03	47.74
GSMUA_Achr7P02960_001	Banana	nucleus	55.94	47.68
Os08t0112700-01	Rice	nucleus	51.49	46.85
KXG26379	Sorghum	nucleus	47.03	46.34
TraesCS7A01G319400.2	Wheat	mitochondrion, nucleus	50.99	44.98
HORVU7Hr1G076310.14	Barley	mitochondrion, nucleus	50.99	44.78
TraesCS7D01G315900.1	Wheat	mitochondrion, nucleus	50.99	44.4
OQU78925	Sorghum	nucleus	47.03	43.98
Zm00001d035053_P002	Maize	nucleus	42.57	43.88
Zm00001d049692_P001	Maize	nucleus	50.0	38.4
TraesCS1B01G467500.1	Wheat	nucleus	0.99	2.04

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078C6T8	EnsemblPlants:CDX72816	ProteinID:CDX72816	ProteinID:CDX72816.1
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00103205001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF152	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0004EDDCC2	SEG:seg	:	:	:

Description

BnaC06g32640D

Coordinates

chrLK031797:-:404673..407359

Molecular Weight (calculated)

23084.2 Da

IEP (calculated)

6.786

GRAVY (calculated)

-0.329

Length

202 amino acids

Sequence
(BLAST)

001: MVRGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGVIDKY LKCTGGHREQ FQPPNLDPKD EVNVLKKEVE
101: MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MEIMLQEIQS LRNKEGVLEN ANKYLLDKIE ENNNSILDAN FATVETNYSY IPLAMPSEIF
201: QF

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.