Factsheet for Bra016129.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra010623.1-P
Bra011509.1-P
Bra011797.1-P
Bra017638.1-P
Bra020600.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71692.1	Bra020600.1-P	AT1G48150.1	15805477
AT1G71692.1	Bra000393.1-P	AT2G45660.1	15805477
AT1G71692.1	Bra004928.1-P	AT2G45660.1	15805477
AT1G71692.1	Bra039324.1-P	AT2G45660.1	15805477
AT1G71692.1	Bra011509.1-P	AT3G57230.1	15805477
AT1G71692.1	Bra017638.1-P	AT3G57230.1	15805477
AT1G71692.1	Bra010623.1-P	AT4G37940.1	15805477
AT1G71692.1	Bra011797.1-P	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048353	Potato	nucleus	45.74	52.44
CDX96334	Canola	nucleus	100.0	44.13
Bra007972.1-P	Field mustard	nucleus	93.62	41.71
AT1G71692.1	Thale cress	nucleus	91.49	40.76
Bra003919.1-P	Field mustard	nucleus	89.36	39.62
KRH39983	Soybean	nucleus	56.38	26.11
KRH23802	Soybean	nucleus	54.26	25.0
Solyc11g032100.1.1	Tomato	nucleus	52.13	24.38
VIT_18s0041g02140.t01	Wine grape	nucleus	50.0	23.74
GSMUA_Achr7P02960_001	Banana	nucleus	50.0	19.83
Os12t0206800-00	Rice	nucleus	41.49	19.31
GSMUA_Achr11P...	Banana	nucleus	45.74	19.2
OQU78925	Sorghum	nucleus	43.62	18.98
EES13239	Sorghum	mitochondrion, nucleus	42.55	18.02
Os08t0112700-01	Rice	nucleus	41.49	17.57
TraesCS2A01G311100.1	Wheat	nucleus	36.17	16.83
TraesCS2D01G309300.1	Wheat	nucleus	36.17	16.83
Zm00001d025479_P001	Maize	nucleus	35.11	16.58
TraesCS7A01G319400.2	Wheat	mitochondrion, nucleus	39.36	16.16
KXG26379	Sorghum	nucleus	35.11	16.1
HORVU7Hr1G076310.14	Barley	mitochondrion, nucleus	39.36	16.09
TraesCS7D01G315900.1	Wheat	mitochondrion, nucleus	39.36	15.95
Zm00001d035053_P002	Maize	nucleus	32.98	15.82
Zm00001d049692_P001	Maize	nucleus	41.49	14.83
TraesCS1B01G467500.1	Wheat	nucleus	1.06	1.02
PGSC0003DMT400048352	Potato	nucleus	1.06	0.86
Bra016128.1-P	Field mustard	nucleus	0.0	0.0

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra016129	EnsemblPlants:Bra016129.1	EnsemblPlants:Bra016129.1-P	GO:GO:0003674	GO:GO:0003700
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR002487	UniProt:M4DI02
PFAM:PF01486	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF152	InterPro:TF_Kbox	UniParc:UPI0002541AEB
SEG:seg	:	:	:	:	:

Description

AT1G71692 (E=2e-036) AGL12, XAL1 | AGL12 (AGAMOUS-LIKE 12); transcription factor

Coordinates

chrA07:-:19275806..19277004

Molecular Weight (calculated)

10831.1 Da

IEP (calculated)

4.335

GRAVY (calculated)

-0.237

Length

94 amino acids

Sequence
(BLAST)

1: MFGGGDGAMN LEELLLLEKH LEYWISQIRS AKMEIMLQEI QSLRNKEGVL KNANKYLLDK IEENNNSILD ANFATVETNY SYIPLAMPSE IFQF

Best Arabidopsis Sequence Match ( AT1G71692.1 )
(BLAST)

001: MARGKIQLKR IENPVHRQVT FCKRRTGLLK KAKELSVLCD AEIGVVIFSP QGKLFELATK GTMEGMIDKY MKCTGGGRGS SSATFTAQEQ LQPPNLDPKD
101: EINVLKQEIE MLQKGISYMF GGGDGAMNLE ELLLLEKHLE YWISQIRSAK MDVMLQEIQS LRNKEGVLKN TNKYLLEKIE ENNNSILDAN FAVMETNYSY
201: PLTMPSEIFQ F

Arabidopsis Description

AGL12Agamous-like MADS-box protein AGL12 [Source:UniProtKB/Swiss-Prot;Acc:Q38841]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.