Factsheet for Bra010623.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra000392.1-P
Bra000393.1-P
Bra002368.1-P
Bra003919.1-P
Bra004007.1-P
Bra004361.1-P
Bra004927.1-P
Bra004928.1-P
Bra006595.1-P
Bra007972.1-P
Bra010623.1-P
Bra011509.1-P
Bra011797.1-P
Bra012564.1-P
Bra012997.1-P
Bra013364.1-P
Bra014454.1-P
Bra016128.1-P
Bra016129.1-P
Bra017638.1-P
Bra018296.1-P
Bra019221.1-P
Bra019343.1-P
Bra020826.1-P
Bra021470.1-P
Bra029347.1-P
Bra030228.1-P
Bra033467.1-P
Bra035952.1-P
Bra038326.1-P
Bra038511.1-P
Bra039170.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37940.1	Bra004007.1-P	AT1G69120.1	15805477
AT4G37940.1	Bra004361.1-P	AT1G69120.1	15805477
AT4G37940.1	Bra038326.1-P	AT1G69120.1	15805477
AT4G37940.1	Bra003919.1-P	AT1G71692.1	15805477
AT4G37940.1	Bra007972.1-P	AT1G71692.1	15805477
AT4G37940.1	Bra016128.1-P	AT1G71692.1	15805477
AT4G37940.1	Bra016129.1-P	AT1G71692.1	15805477
AT4G37940.1	Bra030228.1-P	AT2G22540.1	15805477
AT4G37940.1	Bra038511.1-P	AT2G22540.1	15805477
AT4G37940.1	Bra000214.1-P	AT2G41090.1	17360592
AT4G37940.1	Bra000392.1-P	AT2G45650.1	15805477
AT4G37940.1	Bra004927.1-P	AT2G45650.1	15805477
AT4G37940.1	Bra000393.1-P	AT2G45660.1	15805477
AT4G37940.1	Bra004928.1-P	AT2G45660.1	15805477
AT4G37940.1	Bra039324.1-P	AT2G45660.1	15805477
AT4G37940.1	Bra021470.1-P	AT3G02310.1	15805477
AT4G37940.1	Bra039170.1-P	AT3G02310.1	15805477
AT4G37940.1	Bra018296.1-P	AT3G51920.1	17360592
AT4G37940.1	Bra033467.1-P	AT3G51920.1	17360592
AT4G37940.1	Bra011509.1-P	AT3G57230.1	15805477
AT4G37940.1	Bra017638.1-P	AT3G57230.1	15805477
AT4G37940.1	Bra014454.1-P	AT3G61120.1	15805477
AT4G37940.1	Bra012564.1-P	AT4G18960.1	15805477
AT4G37940.1	Bra013364.1-P	AT4G18960.1	15805477
AT4G37940.1	Bra019343.1-P	AT4G22950.1	15805477
AT4G37940.1	Bra020826.1-P	AT4G22950.1	15805477
AT4G37940.1	Bra019221.1-P	AT4G24540.1	15805477
AT4G37940.1	Bra010623.1-P	AT4G37940.1	15805477
AT4G37940.1	Bra011797.1-P	AT4G37940.1	15805477
AT4G37940.1	Bra002368.1-P	AT5G21274.1	17360592
AT4G37940.1	Bra006595.1-P	AT5G21274.1	17360592
AT4G37940.1	Bra012997.1-P	AT5G60910.1	15805477
AT4G37940.1	Bra029347.1-P	AT5G60910.1	15805477
AT4G37940.1	Bra035952.1-P	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90394	Canola	nucleus	99.07	92.58
AT4G37940.1	Thale cress	nucleus	92.06	86.4
Bra011797.1-P	Field mustard	nucleus	92.06	86.4
Bra030222.1-P	Field mustard	nucleus	79.44	74.89
Bra039921.1-P	Field mustard	nucleus	76.64	72.25
VIT_00s0211g00180.t01	Wine grape	nucleus	65.89	62.95
Solyc02g091550.1.1	Tomato	nucleus	64.49	58.72
KRH74451	Soybean	nucleus	58.41	56.31
KRH39494	Soybean	nucleus	57.94	56.11
Bra017638.1-P	Field mustard	nucleus	62.62	55.83
Bra011509.1-P	Field mustard	nucleus	57.01	42.07
Bra040719.1-P	Field mustard	nucleus	32.24	40.59
Bra025411.1-P	Field mustard	nucleus	28.5	34.66
Bra004361.1-P	Field mustard	nucleus	30.37	34.39
Bra037895.1-P	Field mustard	nucleus	35.98	33.48
Bra000696.1-P	Field mustard	nucleus	35.05	32.47
Bra012564.1-P	Field mustard	nucleus	35.51	30.28
Bra013364.1-P	Field mustard	nucleus	35.05	29.76
Bra032814.1-P	Field mustard	nucleus	35.05	29.64
Bra010955.1-P	Field mustard	nucleus	33.64	29.51
Bra007419.1-P	Field mustard	nucleus	33.64	29.39
Bra030032.1-P	Field mustard	nucleus	34.11	28.97
Bra039170.1-P	Field mustard	nucleus	33.18	28.4
Bra029347.1-P	Field mustard	nucleus	31.78	28.33
Bra004716.1-P	Field mustard	nucleus	32.24	28.28
Bra014454.1-P	Field mustard	nucleus	30.37	28.26
Bra014552.1-P	Field mustard	nucleus	32.71	28.23
Bra008674.1-P	Field mustard	nucleus	33.18	28.17
Bra006322.1-P	Field mustard	nucleus	32.71	28.0
Bra011021.1-P	Field mustard	nucleus	33.18	27.95
Bra035952.1-P	Field mustard	nucleus	31.31	27.8
Bra012997.1-P	Field mustard	nucleus	31.31	27.8
Bra021470.1-P	Field mustard	nucleus	32.71	27.78
Bra004927.1-P	Field mustard	nucleus	31.31	27.69
Bra025126.1-P	Field mustard	nucleus	33.18	27.63
Bra038326.1-P	Field mustard	nucleus	32.24	26.95
Bra000392.1-P	Field mustard	nucleus	31.78	26.46
Bra026543.1-P	Field mustard	nucleus	33.18	26.39
Bra003356.1-P	Field mustard	nucleus	33.18	26.01
Bra017376.1-P	Field mustard	nucleus	28.5	25.1
Bra036201.1-P	Field mustard	nucleus	28.97	25.0
Bra004007.1-P	Field mustard	nucleus	30.37	23.99

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra010623	EnsemblPlants:Bra010623.1	EnsemblPlants:Bra010623.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4D2C3
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF263	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025463CA	:	:	:

Description

AT4G37940 (E=8e-079) AGL21 | AGL21; transcription factor

Coordinates

chrA08:-:15624501..15627760

Molecular Weight (calculated)

24648.5 Da

IEP (calculated)

9.947

GRAVY (calculated)

-0.674

Length

214 amino acids

Sequence
(BLAST)

001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQENHRQI MGEQLNGVSV NELNILENQL EISLRGIRMK KRNLIHQENL ELSRKVQRIH QENVELYKKA YTSSTNGFIQ RELAVADDES NTQIRLQLSQ
201: PDHSDYETPP RASQ

Best Arabidopsis Sequence Match ( AT4G37940.4 )
(BLAST)

001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KRNLIHQENL DLSRKVQRIH QENVELYKKA YMANTNGFTH REVAVADDES HTQIRLQLSQ
201: PEHSDYDTPP RANE

Arabidopsis Description

AGL21Agamous-like MADS-box protein AGL21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.