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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • plastid 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90741 Canola nucleus 100.0 100.0
Bra037895.1-P Field mustard nucleus 93.51 93.91
KRH64836 Soybean nucleus 23.81 91.67
VIT_18s0041g01880.t01 Wine grape nucleus 74.03 76.68
KRH56460 Soybean nucleus 71.43 74.32
KRH64830 Soybean nucleus 45.89 65.84
Solyc11g028020.1.1 Tomato nucleus 62.77 65.02
PGSC0003DMT400013248 Potato nucleus 64.07 63.79
GSMUA_Achr10P... Banana nucleus 64.5 63.68
PGSC0003DMT400065614 Potato nucleus 63.2 62.93
AT4G09960.4 Thale cress nucleus 87.88 61.7
GSMUA_Achr7P23690_001 Banana nucleus 61.9 59.83
Bra013364.1-P Field mustard nucleus 59.74 54.76
Bra004716.1-P Field mustard nucleus 57.58 54.51
Bra012564.1-P Field mustard nucleus 58.87 54.18
GSMUA_Achr5P16870_001 Banana nucleus, plastid 64.07 52.11
Bra007419.1-P Field mustard nucleus 54.98 51.84
Bra014552.1-P Field mustard nucleus 54.55 50.81
Solyc06g064840.2.1 Tomato nucleus 42.42 48.76
Bra003356.1-P Field mustard nucleus 51.52 43.59
Bra025411.1-P Field mustard nucleus 29.44 38.64
Bra030222.1-P Field mustard nucleus 34.63 35.24
Bra010623.1-P Field mustard nucleus 32.47 35.05
Bra039921.1-P Field mustard nucleus 34.2 34.8
Bra006322.1-P Field mustard nucleus 37.66 34.8
Bra011797.1-P Field mustard nucleus 34.2 34.65
Bra021470.1-P Field mustard nucleus 37.66 34.52
Bra008674.1-P Field mustard nucleus 37.66 34.52
Bra010955.1-P Field mustard nucleus 36.36 34.43
Bra039170.1-P Field mustard nucleus 37.23 34.4
Bra004361.1-P Field mustard nucleus 28.14 34.39
Bra017638.1-P Field mustard nucleus 35.5 34.17
Bra004927.1-P Field mustard nucleus 35.5 33.88
Bra030032.1-P Field mustard nucleus 36.36 33.33
Bra029347.1-P Field mustard nucleus 34.2 32.92
Bra032814.1-P Field mustard nucleus 35.93 32.81
Bra035952.1-P Field mustard nucleus 33.33 31.95
Bra012997.1-P Field mustard nucleus 33.33 31.95
Bra000392.1-P Field mustard nucleus 35.5 31.91
Bra014454.1-P Field mustard nucleus 31.6 31.74
Bra025126.1-P Field mustard nucleus 35.06 31.52
Bra026543.1-P Field mustard nucleus 35.93 30.86
Bra038326.1-P Field mustard nucleus 32.03 28.91
Bra036201.1-P Field mustard nucleus 30.74 28.63
Bra011021.1-P Field mustard nucleus 31.17 28.35
Bra017376.1-P Field mustard nucleus 28.57 27.16
Bra004007.1-P Field mustard nucleus 31.6 26.94
Bra011509.1-P Field mustard nucleus 32.9 26.21
Bra040719.1-P Field mustard nucleus 17.32 23.53
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10EnsemblPlantsGene:Bra000696EnsemblPlants:Bra000696.1EnsemblPlants:Bra000696.1-Pncoils:Coil
GO:GO:0000977GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0045944GO:GO:0046983InterPro:IPR002100InterPro:IPR002487InterPro:IPR036879UniProt:M4C918
InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486PRINTS:PR00404ScanProsite:PS00350PFscan:PS50066
PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF150SMART:SM00432SUPFAM:SSF55455InterPro:TF_Kbox
InterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI00025402FF:::
Description
AT4G09960 (E=7e-110) STK, AGL11 | STK (SEEDSTICK); protein binding / transcription factor
Coordinates
chrA03:-:12525134..12526947
Molecular Weight (calculated)
26380.5 Da
IEP (calculated)
9.964
GRAVY (calculated)
-0.674
Length
231 amino acids
Sequence
(BLAST)
001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELAVLCD AEVALIVFST RGRLYEYGNN NIRATIERYK KASSDNANTH SVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSALN VKELKQVENR LEKAISRIRS KKHELLLAEI ENLHKREIKL DNESIYLRTK IAEVERFQQH HHQMVSGTEM TAIEALASRN
201: YFAHNIMTIG SGSGAGHGCS YFDPDKKTHL G
Best Arabidopsis Sequence Match ( AT4G09960.6 )
(BLAST)
001: MMGRGKIEIK RIENSTNRQV TFCKRRNGLL KKAYELSVLC DAEVALIVFS TRGRLYEYAN NNIRSTIERY KKACSDSTNT STVQEINAAY YQQESAKLRQ
101: QIQTIQNSNR NLMGDSLSSL SVKELKQVEN RLEKAISRIR SKKHELLLVE IENAQKREIE LDNENIYLRT KVAEVERYQQ HHHQMVSGSE INAIEALASR
201: NYFAHSIMTA GSGSGNGGSY SDPDKKILHL G
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.