Factsheet for Bra003356.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98330	Canola	nucleus	83.88	92.34
Bra014552.1-P	Field mustard	nucleus	81.32	89.52
Bra007419.1-P	Field mustard	nucleus	80.22	89.39
AT3G58780.4	Thale cress	nucleus	82.05	79.72
Bra004716.1-P	Field mustard	nucleus	71.06	79.51
KRH14461	Soybean	nucleus	29.3	76.92
CDX67765	Canola	nucleus	97.07	76.15
KRG98899	Soybean	nucleus	57.14	63.41
KRH46066	Soybean	nucleus	57.14	63.16
KRH73684	Soybean	nucleus	55.68	61.79
GSMUA_Achr5P06590_001	Banana	nucleus	38.46	60.0
GSMUA_Achr10P...	Banana	nucleus	46.89	55.9
Solyc07g055920.2.1	Tomato	nucleus	54.58	55.81
PGSC0003DMT400044552	Potato	nucleus	50.92	54.72
VIT_12s0142g00360.t01	Wine grape	nucleus	54.58	54.38
Bra013364.1-P	Field mustard	nucleus	49.82	53.97
Bra012564.1-P	Field mustard	nucleus	48.72	52.99
Bra037895.1-P	Field mustard	nucleus	44.32	52.61
Bra000696.1-P	Field mustard	nucleus	43.59	51.52
GSMUA_Achr6P14760_001	Banana	nucleus	46.89	50.39
TraesCS5B01G115100.1	Wheat	nucleus	43.96	47.62
Zm00001d039434_P001	Maize	nucleus	45.42	47.33
EES00105	Sorghum	nucleus	46.52	47.21
HORVU1Hr1G023620.1	Barley	nucleus	43.22	46.83
HORVU3Hr1G026650.1	Barley	nucleus	46.15	46.49
TraesCS5A01G117500.1	Wheat	nucleus	43.22	46.46
TraesCS5D01G118200.1	Wheat	nucleus	42.86	46.43
Zm00001d023955_P003	Maize	nucleus	45.05	46.42
TraesCS1D01G262700.1	Wheat	nucleus	42.12	46.0
TraesCS3A01G314300.1	Wheat	nucleus	45.79	45.79
TraesCS3D01G140200.2	Wheat	nucleus	45.79	45.62
TraesCS1B01G273300.1	Wheat	nucleus	42.12	45.1
EES15827	Sorghum	nucleus	44.32	44.98
Os01t0201700-02	Rice	nucleus	45.42	44.93
Os05t0203800-02	Rice	nucleus	44.69	44.85
Os12t0207000-01	Rice	nucleus	44.32	44.81
Zm00001d041781_P001	Maize	nucleus	46.15	43.9
TraesCS1B01G144800.1	Wheat	nucleus	43.22	43.87
Zm00001d042591_P002	Maize	nucleus	42.86	43.66
TraesCS1D01G127700.1	Wheat	nucleus	42.86	43.49
TraesCS1A01G125800.1	Wheat	nucleus	42.86	43.49
Os01t0886200-01	Rice	nucleus	42.12	43.4
EES01878	Sorghum	nucleus	43.22	42.6
TraesCS1A01G262700.1	Wheat	endoplasmic reticulum	42.12	41.82
TraesCS3B01G157500.4	Wheat	nucleus	45.79	40.32
GSMUA_Achr10P...	Banana	nucleus	46.89	40.13
OQU77603	Sorghum	nucleus	39.93	37.33
Bra025411.1-P	Field mustard	nucleus	23.81	36.93
Zm00001d037737_P001	Maize	nucleus	41.39	36.93
HORVU1Hr1G029220.1	Barley	nucleus	43.59	36.5
Bra008674.1-P	Field mustard	nucleus	32.23	34.92
Bra010955.1-P	Field mustard	nucleus	30.77	34.43
Bra006322.1-P	Field mustard	nucleus	31.5	34.4
Bra004361.1-P	Field mustard	nucleus	23.81	34.39
Zm00001d008882_P001	Maize	nucleus	41.03	34.04
Bra030032.1-P	Field mustard	nucleus	31.14	33.73
Bra039170.1-P	Field mustard	nucleus	30.77	33.6
Bra021470.1-P	Field mustard	nucleus	30.77	33.33
Bra032814.1-P	Field mustard	nucleus	30.77	33.2
Bra010623.1-P	Field mustard	nucleus	26.01	33.18
Bra017638.1-P	Field mustard	nucleus	28.94	32.92
Bra039921.1-P	Field mustard	nucleus	26.37	31.72
Bra011797.1-P	Field mustard	nucleus	26.37	31.58
Bra000392.1-P	Field mustard	nucleus	29.67	31.52
Bra014454.1-P	Field mustard	nucleus	26.01	30.87
Bra030222.1-P	Field mustard	nucleus	25.64	30.84
Bra012997.1-P	Field mustard	nucleus	27.11	30.71
Bra029347.1-P	Field mustard	nucleus	26.74	30.42
Bra025126.1-P	Field mustard	nucleus	28.57	30.35
Bra035952.1-P	Field mustard	nucleus	26.74	30.29
Bra004927.1-P	Field mustard	nucleus	26.74	30.17
Bra026543.1-P	Field mustard	nucleus	29.3	29.74
Bra011021.1-P	Field mustard	nucleus	26.37	28.35
Bra017376.1-P	Field mustard	nucleus	24.54	27.57
Bra036201.1-P	Field mustard	nucleus	24.91	27.42
Bra038326.1-P	Field mustard	nucleus	25.64	27.34
Bra004007.1-P	Field mustard	nucleus	25.64	25.83
Bra011509.1-P	Field mustard	nucleus	26.37	24.83
Bra040719.1-P	Field mustard	nucleus	12.09	19.41

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra003356	EnsemblPlants:Bra003356.1	EnsemblPlants:Bra003356.1-P	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4CGM3	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF150	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI00025416A5	SEG:seg	:	:	:

Description

AT3G58780 (E=1e-109) SHP1, AGL1 | SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor

Coordinates

chrA07:+:12785029..12790488

Molecular Weight (calculated)

31264.2 Da

IEP (calculated)

9.833

GRAVY (calculated)

-0.807

Length

273 amino acids

Sequence
(BLAST)

001: MMFLVWRVEH VIKGCKSGFP TKNKFYGTKI EERIKKEESM EEGGSSHDAE SSKKLVRGKI EIKRIENTTS RQVTFCKRRN GLLKKAYELS VLCDAEVALV
101: IFSTRGRLYE YANNSVKGTI ERYKKACSDA VNPPSVTEAN TQYYQQEASK LRRQIRDIQN SNRHIVGESL GSLNFKELKN LEGRLEKGIS RVRSKKEMEL
201: QHDNMYLRAK ISQGARLNPE QQDSSVIQGT AVYESGLSSH DQSQHYNRNY IPVNLLEPNQ QFSGQDQPPL QLV

Best Arabidopsis Sequence Match ( AT3G58780.5 )
(BLAST)

001: MSYIGSMEEG GSSHDAESSK KLGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC DAEVALVIFS TRGRLYEYAN NSVRGTIERY KKACSDAVNP
101: PSVTEANTQY YQQEASKLRR QIRDIQNSNR HIVGESLGSL NFKELKNLEG RLEKGISRVR SKKNELLVAE IEYMQKREME LQHNNMYLRA KIAEGARLNP
201: DQQESSVIQG TTVYESGVSS HDQSQHYNRN YIPVNLLEPN QQFSGQDQPP LQLV

Arabidopsis Description

SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.