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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G032300.1
HORVU1Hr1G008290.4
HORVU1Hr1G008300.3
HORVU1Hr1G023620.1
HORVU1Hr1G029220.1
HORVU2Hr1G063800.7
HORVU2Hr1G080490.1
HORVU3Hr1G026650.1
HORVU4Hr1G077850.13
HORVU5Hr1G000370.3
HORVU5Hr1G076400.1
HORVU5Hr1G095630.3
HORVU6Hr1G066140.9
HORVU6Hr1G073040.2
HORVU6Hr1G077300.8
HORVU7Hr1G023940.2
HORVU7Hr1G024000.2
HORVU7Hr1G036130.10
HORVU7Hr1G054220.3

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18960.1 HORVU0Hr1G032300.1 AT2G45650.1 9418042
AT4G18960.1 HORVU6Hr1G066140.9 AT2G45650.1 9418042
AT4G18960.1 HORVU5Hr1G076400.1 AT3G02310.1 15604664
AT4G18960.1 HORVU7Hr1G054220.3 AT3G02310.1 15604664
AT4G18960.1 HORVU5Hr1G076400.1 AT3G02310.1 15805477
AT4G18960.1 HORVU7Hr1G054220.3 AT3G02310.1 15805477
AT4G18960.1 HORVU5Hr1G076400.1 AT3G02310.1 9418042
AT4G18960.1 HORVU7Hr1G054220.3 AT3G02310.1 9418042
AT4G18960.1 HORVU1Hr1G008290.4 AT3G57230.1 15805477
AT4G18960.1 HORVU1Hr1G008300.3 AT3G57230.1 15805477
AT4G18960.1 HORVU2Hr1G080490.1 AT3G57230.1 15805477
AT4G18960.1 HORVU5Hr1G000370.3 AT3G57230.1 15805477
AT4G18960.1 HORVU6Hr1G073040.2 AT3G57230.1 15805477
AT4G18960.1 HORVU7Hr1G023940.2 AT3G57230.1 15805477
AT4G18960.1 HORVU7Hr1G024000.2 AT3G57230.1 15805477
AT4G18960.1 HORVU0Hr1G032300.1 AT3G61120.1 15805477
AT4G18960.1 HORVU6Hr1G066140.9 AT3G61120.1 15805477
AT4G18960.1 HORVU1Hr1G023620.1 AT4G18960.1 14555696
AT4G18960.1 HORVU1Hr1G029220.1 AT4G18960.1 14555696
AT4G18960.1 HORVU3Hr1G026650.1 AT4G18960.1 14555696
AT4G18960.1 HORVU4Hr1G077850.13 AT4G24540.1 15805477
AT4G18960.1 HORVU6Hr1G077300.8 AT4G24540.1 15805477
AT4G18960.1 HORVU7Hr1G036130.10 AT4G24540.1 15805477
AT4G18960.1 HORVU2Hr1G063800.7 AT5G60910.1 15805477
AT4G18960.1 HORVU5Hr1G095630.3 AT5G60910.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G118200.1 Wheat nucleus 94.44 94.44
TraesCS5B01G115100.1 Wheat nucleus 93.65 93.65
TraesCS5A01G117500.1 Wheat nucleus 93.65 92.91
Os12t0207000-01 Rice nucleus 82.14 76.67
Zm00001d023955_P003 Maize nucleus 73.81 70.19
EES15827 Sorghum nucleus 73.02 68.4
Zm00001d041781_P001 Maize nucleus 74.6 65.51
KRH14461 Soybean nucleus 26.98 65.38
VIT_10s0003g02070.t01 Wine grape nucleus 53.57 59.73
GSMUA_Achr10P... Banana nucleus 53.57 58.95
GSMUA_Achr6P14760_001 Banana nucleus 55.95 55.51
HORVU3Hr1G026650.1 Barley nucleus 58.73 54.61
KRH21150 Soybean nucleus 52.38 54.32
KRH59043 Soybean nucleus 51.19 53.09
CDY09267 Canola nucleus 52.38 53.01
KRG98899 Soybean nucleus 51.59 52.85
KRH42930 Soybean nucleus 50.79 52.67
KRH46066 Soybean nucleus 51.59 52.63
KRH73684 Soybean nucleus 51.19 52.44
PGSC0003DMT400073134 Potato nucleus 51.59 52.42
AT4G18960.1 Thale cress nucleus 52.38 52.38
CDX79857 Canola nucleus 50.4 52.05
Bra004716.1-P Field mustard nucleus 50.4 52.05
CDX98330 Canola nucleus 51.19 52.02
Bra014552.1-P Field mustard nucleus 50.79 51.61
Solyc02g071730.2.1 Tomato nucleus 50.79 51.61
CDX78909 Canola nucleus 51.59 51.59
Bra013364.1-P Field mustard nucleus 51.59 51.59
Bra007419.1-P Field mustard nucleus 49.6 51.02
CDX98597 Canola nucleus 50.79 51.0
Bra012564.1-P Field mustard nucleus 50.79 51.0
AT2G42830.2 Thale cress nucleus 50.0 50.81
VIT_12s0142g00360.t01 Wine grape nucleus 53.57 49.27
Solyc07g055920.2.1 Tomato nucleus 50.4 47.57
PGSC0003DMT400044552 Potato nucleus 46.83 46.46
CDX89005 Canola nucleus 50.4 46.01
AT3G58780.4 Thale cress nucleus 50.79 45.55
CDY00589 Canola nucleus 49.6 45.45
CDY49254 Canola nucleus 49.6 45.45
GSMUA_Achr10P... Banana nucleus 55.56 43.89
Bra003356.1-P Field mustard nucleus 46.83 43.22
HORVU1Hr1G029220.1 Barley nucleus 55.16 42.64
CDX99406 Canola nucleus 51.59 41.67
CDX67765 Canola nucleus 50.79 36.78
HORVU5Hr1G000370.3 Barley nucleus 29.76 36.23
HORVU6Hr1G073040.2 Barley nucleus 34.13 35.68
HORVU5Hr1G000480.1 Barley nucleus 25.79 34.21
HORVU5Hr1G095710.1 Barley nucleus 32.14 34.18
HORVU0Hr1G032300.1 Barley nucleus 36.11 34.08
HORVU6Hr1G066140.9 Barley nucleus 36.11 33.96
HORVU5Hr1G076400.1 Barley nucleus 32.14 32.14
HORVU1Hr1G008290.4 Barley nucleus 30.56 32.08
HORVU7Hr1G025700.6 Barley nucleus 34.92 31.88
HORVU7Hr1G023940.2 Barley nucleus 28.97 31.74
HORVU7Hr1G054220.3 Barley nucleus 31.75 31.25
HORVU2Hr1G063800.7 Barley nucleus, plastid 35.32 29.09
HORVU7Hr1G024000.2 Barley nucleus 28.97 27.34
HORVU1Hr1G008300.3 Barley nucleus 30.56 27.11
HORVU5Hr1G095630.3 Barley nucleus, plastid 32.94 27.04
HORVU4Hr1G067680.14 Barley nucleus 30.16 26.76
HORVU2Hr1G080490.1 Barley nucleus, plastid 32.14 26.47
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10EMBL:AK374971ncoils:CoilUniProt:F2EFP5GO:GO:0000003
GO:GO:0000977GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009653GO:GO:0009791GO:GO:0009908GO:GO:0009987GO:GO:0045944GO:GO:0046983
GO:GO:0048283GO:GO:0048481EnsemblPlantsGene:HORVU1Hr1G023620EnsemblPlants:HORVU1Hr1G023620.1InterPro:IPR002100InterPro:IPR002487
InterPro:IPR036879InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486PRINTS:PR00404ScanProsite:PS00350
PFscan:PS50066PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF357SMART:SM00432SUPFAM:SSF55455
InterPro:TF_KboxInterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI0002008927SEG:seg:
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EFP5]
Coordinates
chrchr1H:-:104414916..104421730
Molecular Weight (calculated)
28138.9 Da
IEP (calculated)
9.563
GRAVY (calculated)
-0.457
Length
252 amino acids
Sequence
(BLAST)
001: MGRGRIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN SVKATIERYK KAHACGSTSG APLIEVNAQQ YYQQETAKMR
101: HQIQMLQNTN KHLVGDSVGN LSLKELKQLE SRLEKGIAKI RARKNELLSC EINYMVKREI ELQSDNIDLR TKIAEGEQQL QKVTIARPSA APELNPFTAL
201: DMKCFFPANL FEAAVHAHAQ AQAHAQAQAS LQLNLGCQQL APPGAGDGAH QF
Best Arabidopsis Sequence Match ( AT3G58780.1 )
(BLAST)
001: MEEGGSSHDA ESSKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKNEL LVAEIEYMQK REMELQHNNM YLRAKIAEGA RLNPDQQESS
201: VIQGTTVYES GVSSHDQSQH YNRNYIPVNL LEPNQQFSGQ DQPPLQLV
Arabidopsis Description
SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.