Factsheet for Zm00001d023955_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003409_P001
Zm00001d006094_P001
Zm00001d007949_P001
Zm00001d008882_P001
Zm00001d013259_P002
Zm00001d016957_P003
Zm00001d017614_P003
Zm00001d017932_P002
Zm00001d018142_P001
Zm00001d018667_P003
Zm00001d021057_P001
Zm00001d022088_P004
Zm00001d023736_P001
Zm00001d023955_P003
Zm00001d027955_P001
Zm00001d027957_P001
Zm00001d031620_P001
Zm00001d034045_P003
Zm00001d037737_P001
Zm00001d039434_P001
Zm00001d041781_P001
Zm00001d042591_P002
Zm00001d044899_P001
Zm00001d050897_P002
Zm00001d051465_P002
Zm00001d052180_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	Zm00001d017614_P003	AT2G45650.1	9418042
AT4G18960.1	Zm00001d051465_P002	AT2G45650.1	9418042
AT4G18960.1	Zm00001d006094_P001	AT3G02310.1	15604664
AT4G18960.1	Zm00001d021057_P001	AT3G02310.1	15604664
AT4G18960.1	Zm00001d031620_P001	AT3G02310.1	15604664
AT4G18960.1	Zm00001d006094_P001	AT3G02310.1	15805477
AT4G18960.1	Zm00001d021057_P001	AT3G02310.1	15805477
AT4G18960.1	Zm00001d031620_P001	AT3G02310.1	15805477
AT4G18960.1	Zm00001d006094_P001	AT3G02310.1	9418042
AT4G18960.1	Zm00001d021057_P001	AT3G02310.1	9418042
AT4G18960.1	Zm00001d031620_P001	AT3G02310.1	9418042
AT4G18960.1	Zm00001d003409_P001	AT3G57230.1	15805477
AT4G18960.1	Zm00001d016957_P003	AT3G57230.1	15805477
AT4G18960.1	Zm00001d017932_P002	AT3G57230.1	15805477
AT4G18960.1	Zm00001d050897_P002	AT3G57230.1	15805477
AT4G18960.1	Zm00001d017614_P003	AT3G61120.1	15805477
AT4G18960.1	Zm00001d051465_P002	AT3G61120.1	15805477
AT4G18960.1	Zm00001d008882_P001	AT4G18960.1	14555696
AT4G18960.1	Zm00001d023955_P003	AT4G18960.1	14555696
AT4G18960.1	Zm00001d037737_P001	AT4G18960.1	14555696
AT4G18960.1	Zm00001d039434_P001	AT4G18960.1	14555696
AT4G18960.1	Zm00001d041781_P001	AT4G18960.1	14555696
AT4G18960.1	Zm00001d042591_P002	AT4G18960.1	14555696
AT4G18960.1	Zm00001d018142_P001	AT4G24540.1	15805477
AT4G18960.1	Zm00001d027955_P001	AT4G24540.1	15805477
AT4G18960.1	Zm00001d027957_P001	AT4G24540.1	15805477
AT4G18960.1	Zm00001d044899_P001	AT4G24540.1	15805477
AT4G18960.1	Zm00001d052180_P001	AT4G24540.1	15805477
AT4G18960.1	Zm00001d007949_P001	AT5G60910.1	15805477
AT4G18960.1	Zm00001d013259_P002	AT5G60910.1	15805477
AT4G18960.1	Zm00001d018667_P003	AT5G60910.1	15805477
AT4G18960.1	Zm00001d022088_P004	AT5G60910.1	15805477
AT4G18960.1	Zm00001d023736_P001	AT5G60910.1	15805477
AT4G18960.1	Zm00001d034045_P003	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15827	Sorghum	nucleus	93.58	92.19
Zm00001d041781_P001	Maize	nucleus	94.72	87.46
TraesCS5D01G118200.1	Wheat	nucleus	70.57	74.21
Os12t0207000-01	Rice	nucleus	75.47	74.07
HORVU1Hr1G023620.1	Barley	nucleus	70.19	73.81
TraesCS5B01G115100.1	Wheat	nucleus	70.19	73.81
TraesCS5A01G117500.1	Wheat	nucleus	69.81	72.83
KRH14461	Soybean	nucleus	26.04	66.35
GSMUA_Achr10P...	Banana	nucleus	52.83	61.14
VIT_10s0003g02070.t01	Wine grape	nucleus	52.08	61.06
Zm00001d003409_P001	Maize	nucleus	18.87	57.47
KRG98899	Soybean	nucleus	52.08	56.1
KRH21150	Soybean	nucleus	51.32	55.97
KRH46066	Soybean	nucleus	52.08	55.87
GSMUA_Achr6P14760_001	Banana	nucleus	53.21	55.51
KRH73684	Soybean	nucleus	50.94	54.88
KRH42930	Soybean	nucleus	49.81	54.32
CDX79857	Canola	nucleus	49.81	54.1
Bra004716.1-P	Field mustard	nucleus	49.81	54.1
Bra007419.1-P	Field mustard	nucleus	49.81	53.88
PGSC0003DMT400073134	Potato	nucleus	50.19	53.63
KRH59043	Soybean	nucleus	48.68	53.09
Solyc02g071730.2.1	Tomato	nucleus	49.43	52.82
AT2G42830.2	Thale cress	nucleus	49.43	52.82
CDX98330	Canola	nucleus	49.43	52.82
Bra014552.1-P	Field mustard	nucleus	49.43	52.82
Zm00001d039434_P001	Maize	nucleus	52.08	52.67
AT4G18960.1	Thale cress	nucleus	49.06	51.59
CDY09267	Canola	nucleus	48.3	51.41
Zm00001d042591_P002	Maize	nucleus	51.7	51.12
CDX78909	Canola	nucleus	48.3	50.79
Bra013364.1-P	Field mustard	nucleus	48.3	50.79
CDX98597	Canola	nucleus	47.17	49.8
Bra012564.1-P	Field mustard	nucleus	47.17	49.8
VIT_12s0142g00360.t01	Wine grape	nucleus	51.32	49.63
CDY49254	Canola	nucleus	49.81	48.0
Solyc07g055920.2.1	Tomato	nucleus	47.55	47.19
CDX89005	Canola	nucleus	49.06	47.1
AT3G58780.4	Thale cress	nucleus	49.81	46.98
CDY00589	Canola	nucleus	48.68	46.91
PGSC0003DMT400044552	Potato	nucleus	44.53	46.46
Bra003356.1-P	Field mustard	nucleus	46.42	45.05
Zm00001d045227_P001	Maize	nucleus	22.26	43.7
GSMUA_Achr10P...	Banana	nucleus	52.45	43.57
CDX99406	Canola	nucleus	48.3	41.03
Zm00001d037737_P001	Maize	nucleus	46.79	40.52
Zm00001d045231_P002	Maize	nucleus	33.96	40.0
Zm00001d008882_P001	Maize	nucleus	48.3	38.91
CDX67765	Canola	nucleus	50.19	38.22
Zm00001d034047_P007	Maize	nucleus	32.83	36.25
Zm00001d016957_P003	Maize	nucleus	32.45	35.83
Zm00001d048082_P001	Maize	nucleus	33.21	34.92
Zm00001d028217_P001	Maize	nucleus	32.83	33.72
Zm00001d021057_P001	Maize	nucleus	31.32	33.6
Zm00001d006094_P001	Maize	nucleus	31.32	33.07
Zm00001d017932_P002	Maize	nucleus	29.06	32.63
Zm00001d018667_P003	Maize	nucleus	32.83	32.1
Zm00001d051465_P002	Maize	nucleus	34.72	31.4
Zm00001d022088_P004	Maize	nucleus	29.81	30.62
Zm00001d031620_P001	Maize	nucleus	29.43	30.59
Zm00001d013259_P002	Maize	nucleus	30.94	29.39
Zm00001d017614_P003	Maize	nucleus	30.57	29.24
Zm00001d007949_P001	Maize	nucleus	32.83	28.52
Zm00001d034045_P003	Maize	nucleus	31.32	28.52
Zm00001d023736_P001	Maize	nucleus	25.28	26.07
Zm00001d050897_P002	Maize	nucleus	29.43	24.68

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:542326	ProteinID:AQK40453.1	UniProt:B4FPN6	EMBL:BT039074
ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF357	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000152AEB7	EnsemblPlantsGene:Zm00001d023955	EnsemblPlants:Zm00001d023955_P003	EnsemblPlants:Zm00001d023955_T003
SEG:seg	:	:	:	:	:

Description

Zea mays MADS1 Zea mays MADS1

Coordinates

chr10:+:31669593..31673541

Molecular Weight (calculated)

29898.8 Da

IEP (calculated)

8.863

GRAVY (calculated)

-0.533

Length

265 amino acids

Sequence
(BLAST)

001: MGRGRIEIKR IENNTSRQVT FCKRRNGLLK KAYELSVLCD AEVALVVFSS RGRLYEYANN SVKATIERYK KAHAVGSSSG PPLLEHNAQQ FYQQESAKLR
101: NQIQMLQNTN RHLVGDSVGN LSLKELKQLE SRLEKGISKI RARKSELLAA EINYMAKRET ELQNDHMNLR TKIEEGEQQL QQVTVAQSVA AAAATDVELN
201: PFLEMDTKCF FPGGPFATLD MKCFFPGSLQ MLEAQQRQML ATELNLGYQL APPDTDVANN NPQQF

Best Arabidopsis Sequence Match ( AT2G42830.1 )
(BLAST)

001: MEGGASNEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPTITEA
101: NTQYYQQEAS KLRRQIRDIQ NLNRHILGES LGSLNFKELK NLESRLEKGI SRVRSKKHEM LVAEIEYMQK REIELQNDNM YLRSKITERT GLQQQESSVI
201: HQGTVYESGV TSSHQSGQYN RNYIAVNLLE PNQNSSNQDQ PPLQLV

Arabidopsis Description

SHP2K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT2G42830]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.