Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012564.1-P | Field mustard | nucleus | 99.2 | 99.2 |
| CDY01574 | Canola | nucleus | 46.61 | 95.12 |
| CDY09267 | Canola | nucleus | 93.23 | 93.98 |
| CDX78909 | Canola | nucleus | 94.02 | 93.65 |
| AT4G18960.1 | Thale cress | nucleus | 92.03 | 91.67 |
| CDY13236 | Canola | mitochondrion | 66.53 | 83.08 |
| CDX99406 | Canola | nucleus | 94.02 | 75.64 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 66.93 | 74.34 |
| CDY72391 | Canola | nucleus | 21.91 | 73.33 |
| KRH21150 | Soybean | nucleus | 68.13 | 70.37 |
| CDX71922 | Canola | nucleus | 37.45 | 69.63 |
| PGSC0003DMT400073134 | Potato | nucleus | 66.93 | 67.74 |
| Solyc02g071730.2.1 | Tomato | nucleus | 66.53 | 67.34 |
| KRH42930 | Soybean | nucleus | 62.95 | 65.02 |
| KRH59043 | Soybean | nucleus | 62.15 | 64.2 |
| GSMUA_Achr10P... | Banana | nucleus | 58.57 | 64.19 |
| CDX79856 | Canola | nucleus | 22.71 | 64.04 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 44.62 | 64.0 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 16.33 | 61.19 |
| CDX98330 | Canola | nucleus | 58.96 | 59.68 |
| CDX90741 | Canola | nucleus | 54.18 | 58.87 |
| CDX79857 | Canola | nucleus | 56.57 | 58.2 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 58.57 | 57.87 |
| EES00105 | Sorghum | nucleus | 60.96 | 56.88 |
| Zm00001d039434_P001 | Maize | nucleus | 59.36 | 56.87 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 61.35 | 56.2 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 60.16 | 55.72 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 60.16 | 55.31 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 58.96 | 55.02 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 58.57 | 54.65 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 54.18 | 54.4 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 58.17 | 54.28 |
| Os01t0201700-02 | Rice | nucleus | 59.36 | 53.99 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 54.18 | 53.33 |
| Os05t0203800-02 | Rice | nucleus | 57.37 | 52.94 |
| CDY49254 | Canola | nucleus | 57.77 | 52.73 |
| Zm00001d042591_P002 | Maize | nucleus | 56.18 | 52.61 |
| CDX89005 | Canola | nucleus | 57.77 | 52.54 |
| CDY00589 | Canola | nucleus | 56.97 | 52.0 |
| EES01878 | Sorghum | nucleus | 57.37 | 51.99 |
| Os01t0886200-01 | Rice | nucleus | 54.18 | 51.32 |
| HORVU1Hr1G023620.1 | Barley | nucleus | 51.0 | 50.79 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 50.6 | 50.4 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 50.6 | 50.4 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 50.2 | 49.61 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 53.78 | 49.09 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 60.56 | 49.03 |
| OQU77603 | Sorghum | nucleus | 56.18 | 48.29 |
| Os12t0207000-01 | Rice | nucleus | 51.79 | 48.15 |
| CDY65347 | Canola | nucleus | 30.28 | 48.1 |
| GSMUA_Achr10P... | Banana | nucleus | 60.96 | 47.96 |
| Zm00001d023955_P003 | Maize | nucleus | 49.8 | 47.17 |
| EES15827 | Sorghum | nucleus | 49.4 | 46.1 |
| CDY48451 | Canola | nucleus | 27.89 | 45.75 |
| Zm00001d037737_P001 | Maize | nucleus | 55.38 | 45.42 |
| HORVU1Hr1G029220.1 | Barley | nucleus | 58.57 | 45.09 |
| CDY60297 | Canola | nucleus | 51.39 | 44.18 |
| CDY19977 | Canola | nucleus | 17.93 | 44.12 |
| Zm00001d041781_P001 | Maize | nucleus | 50.2 | 43.9 |
| Zm00001d008882_P001 | Maize | nucleus | 55.38 | 42.25 |
| CDX67765 | Canola | nucleus | 58.17 | 41.95 |
| CDY71878 | Canola | endoplasmic reticulum | 39.44 | 37.64 |
| CDY34564 | Canola | nucleus | 31.87 | 36.7 |
| CDY36077 | Canola | nucleus | 32.27 | 36.65 |
| CDY11824 | Canola | nucleus | 35.46 | 36.33 |
| CDY66153 | Canola | nucleus | 35.46 | 36.33 |
| CDY18911 | Canola | nucleus | 33.86 | 35.87 |
| CDX69345 | Canola | nucleus | 32.27 | 35.68 |
| CDY43239 | Canola | nucleus | 35.46 | 35.6 |
| CDY42841 | Canola | nucleus | 33.86 | 35.42 |
| CDY57524 | Canola | nucleus | 35.06 | 35.2 |
| CDY25613 | Canola | nucleus | 31.87 | 35.09 |
| CDX72465 | Canola | nucleus | 33.47 | 35.0 |
| CDX89496 | Canola | nucleus | 31.87 | 34.93 |
| CDX90394 | Canola | nucleus | 31.87 | 34.93 |
| CDY15724 | Canola | nucleus | 35.06 | 34.92 |
| CDY34718 | Canola | nucleus | 35.06 | 34.92 |
| CDY47002 | Canola | nucleus | 33.47 | 34.85 |
| CDY27603 | Canola | nucleus | 35.06 | 34.78 |
| CDX84935 | Canola | nucleus | 34.66 | 34.66 |
| CDY26462 | Canola | nucleus | 35.06 | 34.65 |
| CDX75412 | Canola | nucleus | 33.07 | 34.58 |
| CDY49287 | Canola | nucleus | 33.07 | 34.58 |
| CDX75686 | Canola | nucleus | 31.47 | 34.5 |
| CDY16832 | Canola | nucleus | 33.07 | 34.44 |
| CDY58690 | Canola | nucleus | 33.07 | 34.44 |
| CDX69036 | Canola | nucleus | 32.67 | 34.17 |
| CDY04164 | Canola | nucleus | 35.06 | 34.11 |
| CDX69499 | Canola | nucleus | 35.86 | 34.09 |
| CDY02185 | Canola | nucleus | 32.67 | 34.02 |
| CDY18912 | Canola | nucleus | 32.67 | 34.02 |
| CDX74754 | Canola | nucleus | 34.66 | 33.98 |
| CDX78653 | Canola | nucleus | 34.26 | 33.2 |
| CDY51202 | Canola | nucleus | 33.86 | 33.07 |
| CDY53885 | Canola | nucleus | 33.86 | 33.07 |
| CDX70651 | Canola | nucleus | 33.86 | 32.82 |
| CDY02978 | Canola | nucleus | 33.47 | 32.81 |
| CDY03905 | Canola | nucleus | 35.06 | 32.59 |
| CDY65811 | Canola | nucleus | 31.87 | 31.25 |
| CDX89097 | Canola | nucleus | 30.28 | 30.89 |
| CDX86353 | Canola | nucleus | 30.28 | 30.52 |
| CDY33554 | Canola | nucleus | 31.08 | 30.47 |
| CDY00082 | Canola | nucleus | 29.88 | 30.24 |
| CDY45899 | Canola | nucleus | 29.88 | 30.12 |
| CDX95960 | Canola | nucleus | 30.68 | 30.08 |
| CDY04265 | Canola | nucleus | 31.47 | 28.52 |
| CDY33113 | Canola | nucleus | 34.26 | 27.83 |
| CDY07357 | Canola | nucleus | 31.08 | 26.99 |
| CDX71166 | Canola | nucleus | 31.87 | 22.99 |
| CDY42485 | Canola | nucleus | 31.47 | 20.9 |
| CDX85287 | Canola | nucleus | 15.14 | 20.32 |
| CDY45709 | Canola | nucleus | 13.94 | 20.23 |
| CDY65346 | Canola | cytosol | 1.99 | 20.0 |
| CDY49686 | Canola | nucleus | 13.55 | 19.65 |
| CDY35780 | Canola | nucleus | 14.34 | 18.27 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078EC71 | EnsemblPlants:CDX98597 | ProteinID:CDX98597 | ProteinID:CDX98597.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00106627001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF187 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE27C3 | SEG:seg | : | : |
Description
BnaA03g43820D
Coordinates
chrLK031906:+:35379..40032
Molecular Weight (calculated)
28722.0 Da
IEP (calculated)
9.914
GRAVY (calculated)
-0.882
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQMELGGD SSPQRKSAGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV TLIVFSSRGR LYEYSNNSVK GTIERYKKAI SDNTNTGTVA
101: EINGQYYQQE SAKLRQQIIS IQNSNRQLMG ETIGSMSPKE LRNLEGRLDR SINRIRSKKN ELLFAEIDYM QKREVDLHSE NQLLRAKIAE NERNNSSMNL
201: MPGGYEQTMQ PPQTQSQPFD SRNYFQVAAL QPNNHHYSSA GRQDQTALQL V
101: EINGQYYQQE SAKLRQQIIS IQNSNRQLMG ETIGSMSPKE LRNLEGRLDR SINRIRSKKN ELLFAEIDYM QKREVDLHSE NQLLRAKIAE NERNNSSMNL
201: MPGGYEQTMQ PPQTQSQPFD SRNYFQVAAL QPNNHHYSSA GRQDQTALQL V
001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
Arabidopsis Description
AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.