Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13236 | Canola | mitochondrion | 89.43 | 54.73 |
| CDX98597 | Canola | nucleus | 95.12 | 46.61 |
| CDY09267 | Canola | nucleus | 91.06 | 44.98 |
| CDX78909 | Canola | nucleus | 89.43 | 43.65 |
| CDX99406 | Canola | nucleus | 89.43 | 35.26 |
| CDX98330 | Canola | nucleus | 47.97 | 23.79 |
| CDY65347 | Canola | nucleus | 28.46 | 22.15 |
| CDX79857 | Canola | nucleus | 42.28 | 21.31 |
| CDY49254 | Canola | nucleus | 44.72 | 20.0 |
| CDY65346 | Canola | cytosol | 4.07 | 20.0 |
| CDX89005 | Canola | nucleus | 44.72 | 19.93 |
| CDY00589 | Canola | nucleus | 43.9 | 19.64 |
| CDX90741 | Canola | nucleus | 36.59 | 19.48 |
| CDY71878 | Canola | endoplasmic reticulum | 39.02 | 18.25 |
| CDX67765 | Canola | nucleus | 45.53 | 16.09 |
| CDY45709 | Canola | nucleus | 21.95 | 15.61 |
| CDY60297 | Canola | nucleus | 35.77 | 15.07 |
| CDY49686 | Canola | nucleus | 21.14 | 15.03 |
| CDX85287 | Canola | nucleus | 21.95 | 14.44 |
| CDY34564 | Canola | nucleus | 25.2 | 14.22 |
| CDY36077 | Canola | nucleus | 25.2 | 14.03 |
| CDY42841 | Canola | nucleus | 26.02 | 13.33 |
| CDY58690 | Canola | nucleus | 26.02 | 13.28 |
| CDY16832 | Canola | nucleus | 25.2 | 12.86 |
| CDY47002 | Canola | nucleus | 25.2 | 12.86 |
| CDY02185 | Canola | nucleus | 25.2 | 12.86 |
| CDY35780 | Canola | nucleus | 20.33 | 12.69 |
| CDY66153 | Canola | nucleus | 25.2 | 12.65 |
| CDY11824 | Canola | nucleus | 25.2 | 12.65 |
| CDY43239 | Canola | nucleus | 24.39 | 12.0 |
| CDY27603 | Canola | nucleus | 24.39 | 11.86 |
| CDY65811 | Canola | nucleus | 24.39 | 11.72 |
| CDY57524 | Canola | nucleus | 23.58 | 11.6 |
| CDX84935 | Canola | nucleus | 23.58 | 11.55 |
| CDY15724 | Canola | nucleus | 23.58 | 11.51 |
| CDX69345 | Canola | nucleus | 21.14 | 11.45 |
| CDY26462 | Canola | nucleus | 23.58 | 11.42 |
| CDX69499 | Canola | nucleus | 24.39 | 11.36 |
| CDX90394 | Canola | nucleus | 21.14 | 11.35 |
| CDX89496 | Canola | nucleus | 21.14 | 11.35 |
| CDY33554 | Canola | nucleus | 23.58 | 11.33 |
| CDY34718 | Canola | nucleus | 22.76 | 11.11 |
| CDY25613 | Canola | nucleus | 20.33 | 10.96 |
| CDX95960 | Canola | nucleus | 22.76 | 10.94 |
| CDX75686 | Canola | nucleus | 20.33 | 10.92 |
| CDX86353 | Canola | nucleus | 21.95 | 10.84 |
| CDY04265 | Canola | nucleus | 24.39 | 10.83 |
| CDY03905 | Canola | nucleus | 23.58 | 10.74 |
| CDX70651 | Canola | nucleus | 21.95 | 10.42 |
| CDX78653 | Canola | nucleus | 21.95 | 10.42 |
| CDY02978 | Canola | nucleus | 21.14 | 10.16 |
| CDY18911 | Canola | nucleus | 19.51 | 10.13 |
| CDY51202 | Canola | nucleus | 21.14 | 10.12 |
| CDY00082 | Canola | nucleus | 20.33 | 10.08 |
| CDY04164 | Canola | nucleus | 21.14 | 10.08 |
| CDY45899 | Canola | nucleus | 20.33 | 10.04 |
| CDY07357 | Canola | nucleus | 23.58 | 10.03 |
| CDY18912 | Canola | nucleus | 19.51 | 9.96 |
| CDY53885 | Canola | nucleus | 20.33 | 9.73 |
| CDX74754 | Canola | nucleus | 19.51 | 9.38 |
| CDX69036 | Canola | nucleus | 17.89 | 9.17 |
| CDY49287 | Canola | nucleus | 17.89 | 9.17 |
| CDX75412 | Canola | nucleus | 17.89 | 9.17 |
| CDX72465 | Canola | nucleus | 17.89 | 9.17 |
| CDY33113 | Canola | nucleus | 19.51 | 7.77 |
| CDY48451 | Canola | nucleus | 8.94 | 7.19 |
| CDX89097 | Canola | nucleus | 13.82 | 6.91 |
| CDX71166 | Canola | nucleus | 17.89 | 6.32 |
| CDY42485 | Canola | nucleus | 17.07 | 5.56 |
| CDX71922 | Canola | nucleus | 2.44 | 2.22 |
| CDY19977 | Canola | nucleus | 1.63 | 1.96 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 0.0 | 0.0 |
| CDX79856 | Canola | nucleus | 0.0 | 0.0 |
| CDY72391 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | GO:A0A078ELH0 | EnsemblPlants:CDY01574 | ProteinID:CDY01574 | ProteinID:CDY01574.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00112616001 | InterPro:IPR002487 | PFAM:PF01486 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF187 |
| InterPro:TF_Kbox | UniParc:UPI0004EEE267 | : | : | : | : |
Description
BnaC07g35640D
Coordinates
chrLK031927:+:725170..725864
Molecular Weight (calculated)
14284.8 Da
IEP (calculated)
8.936
GRAVY (calculated)
-0.975
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MGETIGSISP KELRNLERRL DRSINRIRSK KNELLFAEID YMQKREVDLH SENQLLRAKI AENERNNPSM NLMPGGYEQT VQPLQTQSQP FDSRNYFQVA
101: ALQPNNHHYS STGRQDQTAL QLV
101: ALQPNNHHYS STGRQDQTAL QLV
001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
Arabidopsis Description
AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.