Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72391 | Canola | nucleus | 49.63 | 89.33 |
| CDX79856 | Canola | nucleus | 51.85 | 78.65 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 28.89 | 58.21 |
| CDX98330 | Canola | nucleus | 88.89 | 48.39 |
| CDX79857 | Canola | nucleus | 85.93 | 47.54 |
| CDY49254 | Canola | nucleus | 92.59 | 45.45 |
| CDX89005 | Canola | nucleus | 88.15 | 43.12 |
| CDY00589 | Canola | nucleus | 87.41 | 42.91 |
| CDY19977 | Canola | nucleus | 30.37 | 40.2 |
| CDY48451 | Canola | nucleus | 42.96 | 37.91 |
| CDY09267 | Canola | nucleus | 69.63 | 37.75 |
| CDX98597 | Canola | nucleus | 69.63 | 37.45 |
| CDX78909 | Canola | nucleus | 69.63 | 37.3 |
| CDX90741 | Canola | nucleus | 62.22 | 36.36 |
| GSMUA_Achr10P... | Banana | nucleus | 61.48 | 35.47 |
| CDX67765 | Canola | nucleus | 89.63 | 34.77 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 59.26 | 33.47 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 65.19 | 30.99 |
| CDX99406 | Canola | nucleus | 69.63 | 30.13 |
| CDY60297 | Canola | nucleus | 60.74 | 28.08 |
| CDY49287 | Canola | nucleus | 46.67 | 26.25 |
| CDX72465 | Canola | nucleus | 46.67 | 26.25 |
| CDY66153 | Canola | nucleus | 47.41 | 26.12 |
| CDY11824 | Canola | nucleus | 47.41 | 26.12 |
| CDY15724 | Canola | nucleus | 48.15 | 25.79 |
| CDY04164 | Canola | nucleus | 48.89 | 25.58 |
| CDX69036 | Canola | nucleus | 45.19 | 25.42 |
| CDX75412 | Canola | nucleus | 45.19 | 25.42 |
| CDX84935 | Canola | nucleus | 46.67 | 25.1 |
| CDY27603 | Canola | nucleus | 46.67 | 24.9 |
| CDY18911 | Canola | nucleus | 43.7 | 24.89 |
| CDX90394 | Canola | nucleus | 42.22 | 24.89 |
| CDY26462 | Canola | nucleus | 46.67 | 24.8 |
| CDX69345 | Canola | nucleus | 41.48 | 24.67 |
| CDY02978 | Canola | nucleus | 46.67 | 24.61 |
| CDY34718 | Canola | nucleus | 45.93 | 24.6 |
| CDY25613 | Canola | nucleus | 41.48 | 24.56 |
| CDY51202 | Canola | nucleus | 46.67 | 24.51 |
| CDY57524 | Canola | nucleus | 45.19 | 24.4 |
| CDY43239 | Canola | nucleus | 45.19 | 24.4 |
| CDX78653 | Canola | nucleus | 46.67 | 24.32 |
| CDX69499 | Canola | nucleus | 47.41 | 24.24 |
| CDX74754 | Canola | nucleus | 45.93 | 24.22 |
| CDY03905 | Canola | nucleus | 48.15 | 24.07 |
| CDX75686 | Canola | nucleus | 40.74 | 24.02 |
| CDX89496 | Canola | nucleus | 40.74 | 24.02 |
| CDY36077 | Canola | nucleus | 39.26 | 23.98 |
| CDX70651 | Canola | nucleus | 45.93 | 23.94 |
| CDY34564 | Canola | nucleus | 38.52 | 23.85 |
| CDX89097 | Canola | nucleus | 42.96 | 23.58 |
| CDY53885 | Canola | nucleus | 44.44 | 23.35 |
| CDY18912 | Canola | nucleus | 41.48 | 23.24 |
| CDY65347 | Canola | nucleus | 25.93 | 22.15 |
| CDY02185 | Canola | nucleus | 39.26 | 21.99 |
| CDY58690 | Canola | nucleus | 39.26 | 21.99 |
| CDY13236 | Canola | mitochondrion | 32.59 | 21.89 |
| CDY16832 | Canola | nucleus | 38.52 | 21.58 |
| CDY42841 | Canola | nucleus | 37.78 | 21.25 |
| CDY47002 | Canola | nucleus | 37.78 | 21.16 |
| CDY33113 | Canola | nucleus | 48.15 | 21.04 |
| CDY00082 | Canola | nucleus | 37.78 | 20.56 |
| CDY45899 | Canola | nucleus | 37.78 | 20.48 |
| CDY65811 | Canola | nucleus | 38.52 | 20.31 |
| CDX86353 | Canola | nucleus | 37.04 | 20.08 |
| CDY33554 | Canola | nucleus | 37.78 | 19.92 |
| CDX95960 | Canola | nucleus | 37.78 | 19.92 |
| CDY04265 | Canola | nucleus | 38.52 | 18.77 |
| CDY07357 | Canola | nucleus | 38.52 | 17.99 |
| CDY71878 | Canola | endoplasmic reticulum | 32.59 | 16.73 |
| CDX71166 | Canola | nucleus | 42.96 | 16.67 |
| CDY42485 | Canola | nucleus | 42.22 | 15.08 |
| CDX85287 | Canola | nucleus | 10.37 | 7.49 |
| CDY35780 | Canola | nucleus | 10.37 | 7.11 |
| CDY49686 | Canola | nucleus | 5.19 | 4.05 |
| CDY45709 | Canola | nucleus | 5.19 | 4.05 |
| CDY01574 | Canola | nucleus | 2.22 | 2.44 |
| CDY65346 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078C4S9 | EnsemblPlants:CDX71922 | ProteinID:CDX71922 | ProteinID:CDX71922.1 |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00155673001 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF150 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EB3EEE | SEG:seg | : |
Description
BnaC08g29520D
Coordinates
chrLK031795:-:1312151..1314522
Molecular Weight (calculated)
15245.2 Da
IEP (calculated)
9.990
GRAVY (calculated)
-0.583
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MDESGSSHDA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYASNSVKGT IERYKKACSD AVNPPTVTEA
101: NTQYYQQEAS KLRRQIRDIQ NSNRIVSLVN LLGIV
101: NTQYYQQEAS KLRRQIRDIQ NSNRIVSLVN LLGIV
001: MEGGASNEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPTITEA
101: NTQYYQQEAS KLRRQIRDIQ NLNRHILGES LGSLNFKELK NLESRLEKGI SRVRSKKHEM LVAEIEYMQK REIELQNDNM YLRSKITERT GLQQQESSVI
201: HQGTVYESGV TSSHQSGQYN RNYIAVNLLE PNQNSSNQDQ PPLQLV
101: NTQYYQQEAS KLRRQIRDIQ NLNRHILGES LGSLNFKELK NLESRLEKGI SRVRSKKHEM LVAEIEYMQK REIELQNDNM YLRSKITERT GLQQQESSVI
201: HQGTVYESGV TSSHQSGQYN RNYIAVNLLE PNQNSSNQDQ PPLQLV
Arabidopsis Description
SHP2K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT2G42830]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.