Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04164 | Canola | nucleus | 79.29 | 94.96 |
| Bra017376.1-P | Field mustard | nucleus | 72.49 | 92.18 |
| CDY51202 | Canola | nucleus | 74.11 | 89.11 |
| CDY02978 | Canola | nucleus | 73.79 | 89.06 |
| AT2G03710.1 | Thale cress | nucleus | 71.52 | 85.66 |
| CDY49686 | Canola | nucleus | 43.69 | 78.03 |
| TraesCS7B01G021100.1 | Wheat | nucleus | 16.5 | 77.27 |
| CDY45709 | Canola | nucleus | 43.04 | 76.88 |
| TraesCS7B01G020900.1 | Wheat | nucleus | 17.15 | 76.81 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 14.56 | 67.16 |
| CDY72391 | Canola | nucleus | 14.89 | 61.33 |
| VIT_01s0011g00110.t01 | Wine grape | nucleus | 47.9 | 60.91 |
| KRH70973 | Soybean | nucleus | 45.31 | 57.38 |
| Solyc04g005320.2.1 | Tomato | nucleus | 44.01 | 57.14 |
| KRH75123 | Soybean | nucleus | 44.98 | 56.5 |
| PGSC0003DMT400072891 | Potato | nucleus | 44.01 | 56.2 |
| Solyc05g012020.2.1 | Tomato | nucleus | 43.69 | 55.79 |
| CDY26462 | Canola | nucleus | 45.31 | 55.12 |
| CDX79856 | Canola | nucleus | 15.53 | 53.93 |
| GSMUA_Achr8P28100_001 | Banana | nucleus | 41.75 | 53.75 |
| CDX78653 | Canola | nucleus | 44.98 | 53.67 |
| CDX70651 | Canola | nucleus | 44.66 | 53.28 |
| CDX69499 | Canola | nucleus | 44.98 | 52.65 |
| CDY57524 | Canola | nucleus | 42.39 | 52.4 |
| CDY43239 | Canola | nucleus | 41.42 | 51.2 |
| CDY34718 | Canola | nucleus | 41.75 | 51.19 |
| CDY19977 | Canola | nucleus | 16.5 | 50.0 |
| Zm00001d045231_P002 | Maize | nucleus | 36.25 | 49.78 |
| GSMUA_Achr3P15930_001 | Banana | nucleus | 38.51 | 49.58 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 38.19 | 49.58 |
| CDY15724 | Canola | nucleus | 40.13 | 49.21 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 35.92 | 49.12 |
| EER89250 | Sorghum | nucleus | 35.6 | 48.89 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 33.98 | 48.61 |
| CDY66153 | Canola | nucleus | 38.51 | 48.57 |
| CDY11824 | Canola | nucleus | 38.19 | 48.16 |
| CDX71922 | Canola | nucleus | 21.04 | 48.15 |
| OQU93000 | Sorghum | nucleus | 37.86 | 48.15 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 35.28 | 48.02 |
| Os06t0162800-01 | Rice | nucleus | 34.95 | 48.0 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 37.22 | 47.92 |
| CDY27603 | Canola | nucleus | 39.16 | 47.83 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 34.95 | 47.58 |
| CDX84935 | Canola | nucleus | 38.51 | 47.41 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 34.63 | 47.14 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 33.98 | 46.67 |
| Os03t0215400-01 | Rice | nucleus | 38.51 | 46.3 |
| CDY03905 | Canola | nucleus | 40.45 | 46.3 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 33.98 | 46.26 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 33.66 | 45.81 |
| Zm00001d048082_P001 | Maize | nucleus | 36.57 | 44.84 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 35.92 | 44.76 |
| Zm00001d028217_P001 | Maize | nucleus | 37.22 | 44.57 |
| TraesCS4A01G028200.1 | Wheat | nucleus | 33.33 | 44.4 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 34.95 | 43.72 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 33.66 | 43.15 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 33.33 | 42.56 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 23.3 | 42.35 |
| CDY48451 | Canola | nucleus | 20.71 | 41.83 |
| CDY34564 | Canola | nucleus | 29.13 | 41.28 |
| CDY18911 | Canola | nucleus | 31.39 | 40.93 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 32.69 | 40.89 |
| CDY36077 | Canola | nucleus | 29.13 | 40.72 |
| CDY18912 | Canola | nucleus | 31.39 | 40.25 |
| HORVU7Hr1G025700.6 | Barley | nucleus | 34.95 | 39.13 |
| CDX74754 | Canola | nucleus | 32.36 | 39.06 |
| CDY53885 | Canola | nucleus | 31.07 | 37.35 |
| CDX95960 | Canola | nucleus | 29.77 | 35.94 |
| CDY33554 | Canola | nucleus | 29.77 | 35.94 |
| CDY65811 | Canola | nucleus | 29.77 | 35.94 |
| HORVU4Hr1G067680.14 | Barley | nucleus | 32.69 | 35.56 |
| CDX89097 | Canola | nucleus | 28.16 | 35.37 |
| CDY02185 | Canola | nucleus | 27.51 | 35.27 |
| CDY16832 | Canola | nucleus | 27.51 | 35.27 |
| CDY00082 | Canola | nucleus | 28.16 | 35.08 |
| CDX90741 | Canola | nucleus | 26.21 | 35.06 |
| CDY42841 | Canola | nucleus | 27.18 | 35.0 |
| CDY45899 | Canola | nucleus | 28.16 | 34.94 |
| CDY47002 | Canola | nucleus | 27.18 | 34.85 |
| CDY09267 | Canola | nucleus | 27.83 | 34.54 |
| CDX78909 | Canola | nucleus | 28.16 | 34.52 |
| CDY58690 | Canola | nucleus | 26.86 | 34.44 |
| CDX98597 | Canola | nucleus | 27.83 | 34.26 |
| CDX79857 | Canola | nucleus | 26.86 | 34.02 |
| CDX86353 | Canola | nucleus | 26.86 | 33.33 |
| CDX90394 | Canola | nucleus | 24.6 | 33.19 |
| CDY25613 | Canola | nucleus | 24.27 | 32.89 |
| TraesCS4A01G078700.1 | Wheat | nucleus | 23.3 | 32.88 |
| CDY04265 | Canola | nucleus | 29.45 | 32.85 |
| CDX89496 | Canola | nucleus | 24.27 | 32.75 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 19.74 | 32.62 |
| CDX69345 | Canola | nucleus | 23.62 | 32.16 |
| CDX75686 | Canola | nucleus | 23.62 | 31.88 |
| CDX98330 | Canola | nucleus | 25.57 | 31.85 |
| CDY07357 | Canola | nucleus | 29.45 | 31.49 |
| CDY49254 | Canola | nucleus | 27.18 | 30.55 |
| CDX69036 | Canola | nucleus | 23.62 | 30.42 |
| CDX75412 | Canola | nucleus | 23.62 | 30.42 |
| CDY49287 | Canola | nucleus | 23.62 | 30.42 |
| CDX72465 | Canola | nucleus | 22.98 | 29.58 |
| CDX89005 | Canola | nucleus | 25.57 | 28.62 |
| CDY00589 | Canola | nucleus | 25.24 | 28.36 |
| CDX99406 | Canola | nucleus | 28.16 | 27.88 |
| CDY60297 | Canola | nucleus | 24.27 | 25.68 |
| CDY65347 | Canola | nucleus | 12.3 | 24.05 |
| CDY35780 | Canola | nucleus | 15.21 | 23.86 |
| CDY13236 | Canola | mitochondrion | 15.21 | 23.38 |
| CDY42485 | Canola | nucleus | 28.16 | 23.02 |
| CDX67765 | Canola | nucleus | 25.89 | 22.99 |
| CDX85287 | Canola | nucleus | 13.59 | 22.46 |
| CDX71166 | Canola | nucleus | 24.27 | 21.55 |
| CDY01574 | Canola | nucleus | 7.77 | 19.51 |
| CDY71878 | Canola | endoplasmic reticulum | 16.18 | 19.01 |
| CDY65346 | Canola | cytosol | 0.65 | 8.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078H8C9 | UniProt:A0A078H8C9 | EnsemblPlants:CDY33113 | ProteinID:CDY33113 |
| ProteinID:CDY33113.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00053782001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF352 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEFA1F | SEG:seg |
Description
BnaC09g22090DBnaC09g22090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8C9]
Coordinates
chrLK032306:+:134516..136597
Molecular Weight (calculated)
35360.8 Da
IEP (calculated)
8.411
GRAVY (calculated)
-0.669
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSLEGVDPNF QRDKGLTSGY TNNIHKAVKN TQTYFDYLFK
101: LVSRNYHIVV YISGMAKTIE KYRKHSYATM DPNQSAEDLQ EKYQDYLNLK SRVEILQHSQ RHLLGEEIAG MGVNELEQLE CQVDTSLRQI RSTKARFMLD
201: QLSDLKTKEE MLLETNRDLK RKLEEDNATL TQSLWGASSS AEHSQQQQQQ QGMSSYQTNL PTQEAGFFNP LQGNVAWQMS HYNPGVTNAS DSATTSQNVI
301: NGFFPGWMV
101: LVSRNYHIVV YISGMAKTIE KYRKHSYATM DPNQSAEDLQ EKYQDYLNLK SRVEILQHSQ RHLLGEEIAG MGVNELEQLE CQVDTSLRQI RSTKARFMLD
201: QLSDLKTKEE MLLETNRDLK RKLEEDNATL TQSLWGASSS AEHSQQQQQQ QGMSSYQTNL PTQEAGFFNP LQGNVAWQMS HYNPGVTNAS DSATTSQNVI
301: NGFFPGWMV
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG FFPGWMV
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG FFPGWMV
Arabidopsis Description
AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.