Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004007.1-P | Field mustard | nucleus | 96.39 | 98.52 |
| CDY33554 | Canola | nucleus | 89.17 | 96.48 |
| CDX95960 | Canola | nucleus | 88.45 | 95.7 |
| CDY65811 | Canola | nucleus | 88.09 | 95.31 |
| AT1G69120.1 | Thale cress | nucleus | 87.36 | 94.53 |
| CDY07357 | Canola | nucleus | 98.56 | 94.46 |
| CDY36077 | Canola | nucleus | 61.37 | 76.92 |
| CDY34564 | Canola | nucleus | 59.21 | 75.23 |
| KRH07467 | Soybean | nucleus | 62.82 | 73.73 |
| KRH45412 | Soybean | nucleus | 61.01 | 71.61 |
| KRH70974 | Soybean | nucleus | 57.76 | 65.84 |
| CDY19977 | Canola | nucleus | 24.19 | 65.69 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 15.88 | 65.67 |
| PGSC0003DMT400072888 | Potato | nucleus | 55.96 | 63.52 |
| Solyc05g056620.1.1 | Tomato | nucleus | 55.96 | 63.52 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 49.82 | 57.02 |
| EER90862 | Sorghum | nucleus | 49.1 | 55.51 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 49.1 | 55.28 |
| CDY72391 | Canola | nucleus | 14.8 | 54.67 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 48.38 | 54.03 |
| CDY42841 | Canola | nucleus | 46.21 | 53.33 |
| CDY58690 | Canola | nucleus | 46.21 | 53.11 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 46.57 | 52.87 |
| Os03t0752800-02 | Rice | nucleus | 46.57 | 52.44 |
| CDY02185 | Canola | nucleus | 45.49 | 52.28 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 46.21 | 52.24 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 46.93 | 52.0 |
| CDY16832 | Canola | nucleus | 45.13 | 51.87 |
| CDY47002 | Canola | nucleus | 45.13 | 51.87 |
| EER95753 | Sorghum | nucleus | 49.82 | 51.11 |
| EER97510 | Sorghum | nucleus | 46.57 | 50.99 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 45.85 | 50.6 |
| Os07t0108900-02 | Rice | nucleus | 48.74 | 50.56 |
| Zm00001d018667_P003 | Maize | nucleus | 49.46 | 50.55 |
| Zm00001d022088_P004 | Maize | nucleus | 46.93 | 50.39 |
| GSMUA_Achr10P... | Banana | nucleus | 51.26 | 49.82 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 48.74 | 49.82 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 45.49 | 49.61 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 41.16 | 49.57 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 48.74 | 49.27 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 48.74 | 49.27 |
| Os07t0605200-01 | Rice | nucleus | 43.32 | 48.19 |
| Zm00001d013259_P002 | Maize | nucleus | 48.38 | 48.03 |
| CDX79856 | Canola | nucleus | 15.16 | 47.19 |
| CDX86353 | Canola | nucleus | 42.24 | 46.99 |
| CDY00082 | Canola | nucleus | 41.88 | 46.77 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 44.77 | 46.44 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 44.77 | 46.44 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 44.04 | 46.39 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 44.4 | 46.07 |
| CDY45899 | Canola | nucleus | 41.16 | 45.78 |
| Zm00001d034045_P003 | Maize | nucleus | 47.65 | 45.36 |
| Zm00001d007949_P001 | Maize | nucleus | 49.82 | 45.25 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 42.96 | 44.74 |
| HORVU2Hr1G063800.7 | Barley | nucleus, plastid | 48.38 | 43.79 |
| HORVU5Hr1G095630.3 | Barley | nucleus, plastid | 47.65 | 43.0 |
| CDY66153 | Canola | nucleus | 35.38 | 40.0 |
| CDY15724 | Canola | nucleus | 36.1 | 39.68 |
| CDY11824 | Canola | nucleus | 35.02 | 39.59 |
| CDX84935 | Canola | nucleus | 35.74 | 39.44 |
| CDY18911 | Canola | nucleus | 33.57 | 39.24 |
| CDY48451 | Canola | nucleus | 21.66 | 39.22 |
| CDY34718 | Canola | nucleus | 35.38 | 38.89 |
| CDY27603 | Canola | nucleus | 35.38 | 38.74 |
| CDY26462 | Canola | nucleus | 35.38 | 38.58 |
| CDX71922 | Canola | nucleus | 18.77 | 38.52 |
| CDY57524 | Canola | nucleus | 34.66 | 38.4 |
| CDX78653 | Canola | nucleus | 35.74 | 38.22 |
| CDY43239 | Canola | nucleus | 34.3 | 38.0 |
| CDX70651 | Canola | nucleus | 35.38 | 37.84 |
| CDY18912 | Canola | nucleus | 32.85 | 37.76 |
| CDX69499 | Canola | nucleus | 35.74 | 37.5 |
| CDX74754 | Canola | nucleus | 34.3 | 37.11 |
| CDY03905 | Canola | nucleus | 36.1 | 37.04 |
| CDY53885 | Canola | nucleus | 34.3 | 36.97 |
| CDY51202 | Canola | nucleus | 33.94 | 36.58 |
| Os12t0501700-00 | Rice | nucleus | 30.32 | 36.05 |
| CDY02978 | Canola | nucleus | 33.21 | 35.94 |
| KXG23502 | Sorghum | nucleus | 28.88 | 35.87 |
| CDX85287 | Canola | nucleus | 23.83 | 35.29 |
| CDX89097 | Canola | nucleus | 31.05 | 34.96 |
| CDY04164 | Canola | nucleus | 32.13 | 34.5 |
| CDX79857 | Canola | nucleus | 28.52 | 32.38 |
| CDX90394 | Canola | nucleus | 26.71 | 32.31 |
| CDX90741 | Canola | nucleus | 26.71 | 32.03 |
| CDY25613 | Canola | nucleus | 26.35 | 32.02 |
| CDY35780 | Canola | nucleus | 22.74 | 31.98 |
| Zm00001d023736_P001 | Maize | nucleus | 29.6 | 31.91 |
| CDX78909 | Canola | nucleus | 28.88 | 31.75 |
| CDY09267 | Canola | nucleus | 28.52 | 31.73 |
| CDX69345 | Canola | nucleus | 25.99 | 31.72 |
| CDX98597 | Canola | nucleus | 28.52 | 31.47 |
| CDX75686 | Canola | nucleus | 25.99 | 31.44 |
| CDX89496 | Canola | nucleus | 25.63 | 31.0 |
| CDX75412 | Canola | nucleus | 26.35 | 30.42 |
| CDX98330 | Canola | nucleus | 27.08 | 30.24 |
| CDX69036 | Canola | nucleus | 25.99 | 30.0 |
| CDY33113 | Canola | nucleus | 32.85 | 29.45 |
| CDX72465 | Canola | nucleus | 25.27 | 29.17 |
| CDY49287 | Canola | nucleus | 25.27 | 29.17 |
| CDY00589 | Canola | nucleus | 27.08 | 27.27 |
| CDY49254 | Canola | nucleus | 27.08 | 27.27 |
| CDX89005 | Canola | nucleus | 26.71 | 26.81 |
| CDX99406 | Canola | nucleus | 28.88 | 25.64 |
| CDY60297 | Canola | nucleus | 26.35 | 25.0 |
| CDY01574 | Canola | nucleus | 10.83 | 24.39 |
| CDY45709 | Canola | nucleus | 15.16 | 24.28 |
| CDY49686 | Canola | nucleus | 15.16 | 24.28 |
| CDY65347 | Canola | nucleus | 13.72 | 24.05 |
| CDY42485 | Canola | nucleus | 30.32 | 22.22 |
| CDX67765 | Canola | nucleus | 27.8 | 22.13 |
| CDY13236 | Canola | mitochondrion | 15.88 | 21.89 |
| CDX71166 | Canola | nucleus | 27.44 | 21.84 |
| CDY71878 | Canola | endoplasmic reticulum | 16.61 | 17.49 |
| CDY65346 | Canola | cytosol | 0.36 | 4.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078EQN4 | EnsemblPlants:CDY04265 | ProteinID:CDY04265 | ProteinID:CDY04265.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00118005001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF244 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF1E30 | SEG:seg | : | : |
Description
BnaC06g25500D
Coordinates
chrLK031950:-:760525..764862
Molecular Weight (calculated)
32454.8 Da
IEP (calculated)
7.283
GRAVY (calculated)
-0.909
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSEGDTWDG PVEIVPLKGI KMGRGRVQLK RIENKINRQV TFSKRRAGLM KKAHEISVLC DAEVALVVFS HKGKLFEYST DSCMEKILER YERYSYAERQ
101: LIAPESDSNT NWSMEYNRLK AKIELLERNQ RHYLGEDLQA MSPKELQNLE QQLDTALKHI RSRKNQLMYD SINELQRKEK AIQEQNSMLS KQIKERENVL
201: RAQQEQWDEQ NHGHNMPPPP PPQQHQIQHP YMLSHQPSPF LNMGGLYQEE DQMAMRRNDL DLSLEPVYNC NLGCFAA
101: LIAPESDSNT NWSMEYNRLK AKIELLERNQ RHYLGEDLQA MSPKELQNLE QQLDTALKHI RSRKNQLMYD SINELQRKEK AIQEQNSMLS KQIKERENVL
201: RAQQEQWDEQ NHGHNMPPPP PPQQHQIQHP YMLSHQPSPF LNMGGLYQEE DQMAMRRNDL DLSLEPVYNC NLGCFAA
001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEDD PMAMRRNDLE LTLEPVYNCN LGCFAA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEDD PMAMRRNDLE LTLEPVYNCN LGCFAA
Arabidopsis Description
AP1AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.