CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX95960
CDY04265
CDY07357
CDY33554
CDY65811

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43850.1	CDX95960	AT1G69120.1	16854969
AT1G43850.1	CDY04265	AT1G69120.1	16854969
AT1G43850.1	CDY07357	AT1G69120.1	16854969
AT1G43850.1	CDY33554	AT1G69120.1	16854969
AT1G43850.1	CDY65811	AT1G69120.1	16854969

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036931.1-P	Field mustard	nucleus, plastid	84.45	27.09
CDY14963	Canola	nucleus, plastid	81.93	26.42
CDY40943	Canola	nucleus, plastid	78.15	24.03
AT1G43850.1	Thale cress	nucleus, plastid	78.57	21.32
Solyc06g059750.2.1	Tomato	nucleus, plastid	66.81	18.97
KRH64564	Soybean	nucleus, plastid	68.49	17.89
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	68.07	17.74
KRH18102	Soybean	plastid	68.07	17.46
Solyc06g059760.2.1	Tomato	nucleus, plastid	65.55	17.37
GSMUA_Achr10P...	Banana	nucleus, plastid	63.87	17.29
KRH53367	Soybean	nucleus	69.33	17.17
KRH15928	Soybean	nucleus, plastid	65.97	17.16
GSMUA_Achr2P20700_001	Banana	plastid	58.82	16.34
CDY57709	Canola	nucleus, plastid	33.19	16.06
GSMUA_Achr6P18610_001	Banana	plastid	57.56	15.64
Zm00001d041803_P001	Maize	nucleus	60.08	15.61
TraesCS4D01G101500.1	Wheat	nucleus, plastid	58.82	15.42
TraesCS4A01G211800.1	Wheat	nucleus, plastid	58.82	15.38
Os11t0207000-01	Rice	nucleus, plastid	58.82	15.32
TraesCS4B01G104300.1	Wheat	nucleus, plastid	58.4	15.24
Zm00001d023706_P002	Maize	nucleus	57.98	15.21
KXG23150	Sorghum	nucleus	59.24	15.21
Os11t0207100-01	Rice	nucleus	59.24	15.11
HORVU4Hr1G017160.3	Barley	nucleus, plastid	58.4	15.08
GSMUA_Achr3P02850_001	Banana	nucleus	56.72	15.07
CDX92714	Canola	cytosol	33.61	15.04
Zm00001d049125_P002	Maize	nucleus, plastid	57.98	14.84
Zm00001d007295_P003	Maize	nucleus, plastid	56.72	14.75
KXG28056	Sorghum	nucleus, plastid	57.98	14.71
TraesCS4A01G211700.2	Wheat	nucleus, plastid	57.14	14.58
TraesCS4B01G104400.2	Wheat	nucleus, plastid	57.14	14.56
TraesCS4D01G101700.1	Wheat	nucleus, plastid	57.14	14.53
HORVU4Hr1G017140.2	Barley	plastid	56.72	14.39
CDY50201	Canola	nucleus, plastid	38.66	13.49
CDX92713	Canola	nucleus, plastid	38.24	13.25
CDY52362	Canola	nucleus	36.13	12.5
GSMUA_Achr5P25900_001	Banana	nucleus	50.42	12.5
CDY30691	Canola	nucleus	38.66	12.14
CDY54085	Canola	nucleus, plastid	35.29	11.91
CDX89417	Canola	nucleus	16.81	10.39
PGSC0003DMT400092079	Potato	nucleus	23.95	7.71
CDY69476	Canola	nucleus	5.46	4.76
CDY70167	Canola	cytosol, mitochondrion, nucleus	1.26	1.06

Protein Annotations

EnsemblPlants:CDY67669	EnsemblPlantsGene:GSBRNA2T00065305001	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF17	PFAM:PF01803
ProteinID:CDY67669	ProteinID:CDY67669.1	SEG:seg	UniParc:UPI0004EE70EA	UniProt:A0A078JLI0	MapMan:35.1

Description

BnaA10g28850DBnaA10g28850D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JLI0]

Coordinates

chrLK036373:+:7390..9216

Molecular Weight (calculated)

28336.5 Da

IEP (calculated)

10.519

GRAVY (calculated)

-0.660

Length

238 amino acids

Sequence
(BLAST)

001: MLRSLGSVKL EPQQLQAMRN LAQVKMEPQH SEQSLFLQQQ QQQQQRQFLQ MPGQSPQTQM NNILHQQRLM QLQHQQHLLK SLPQQRPQLP QQQRPPMRPV
101: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVSEYFAPN AKKRWMCGTV RYVTESLGVV LNSSGQIVLE YAKATQESVF EQLRVVRDGQ LRIVFSPDLK
201: IFSWEFCARR HEELIPRRLL IPQVTSRTVL YVLVIETW

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.