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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
  • cytosol 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
PTS1:peroxisome
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra004007.1-P
Bra004361.1-P
Bra038326.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G43850.1 Bra004007.1-P AT1G69120.1 16854969
AT1G43850.1 Bra004361.1-P AT1G69120.1 16854969
AT1G43850.1 Bra038326.1-P AT1G69120.1 16854969
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY67669 Canola mitochondrion, nucleus 27.09 84.45
Bra032192.1-P Field mustard nucleus, plastid 62.26 59.69
AT1G43850.1 Thale cress nucleus, plastid 66.58 56.33
Solyc06g059750.2.1 Tomato nucleus, plastid 49.33 43.68
KRH15928 Soybean nucleus, plastid 53.77 43.61
VIT_18s0001g15320.t01 Wine grape nucleus, plastid 53.37 43.37
KRH64564 Soybean nucleus, plastid 53.23 43.36
KRH18102 Soybean plastid 53.5 42.78
Solyc06g059760.2.1 Tomato nucleus, plastid 50.54 41.76
KRH53367 Soybean nucleus 53.5 41.31
GSMUA_Achr10P... Banana nucleus, plastid 48.92 41.3
GSMUA_Achr2P20700_001 Banana plastid 47.17 40.84
GSMUA_Achr6P18610_001 Banana plastid 46.9 39.73
Os11t0207000-01 Rice nucleus, plastid 46.77 37.97
GSMUA_Achr3P02850_001 Banana nucleus 45.82 37.95
Os11t0207100-01 Rice nucleus 46.9 37.3
TraesCS4D01G101500.1 Wheat nucleus, plastid 45.55 37.22
TraesCS4A01G211800.1 Wheat nucleus, plastid 45.55 37.14
TraesCS4B01G104300.1 Wheat nucleus, plastid 45.42 36.95
HORVU4Hr1G017160.3 Barley nucleus, plastid 45.55 36.66
Zm00001d007295_P003 Maize nucleus, plastid 45.15 36.61
KXG23150 Sorghum nucleus 45.55 36.46
KXG28056 Sorghum nucleus, plastid 46.09 36.46
Zm00001d049125_P002 Maize nucleus, plastid 45.69 36.45
Zm00001d023706_P002 Maize nucleus 44.47 36.38
Zm00001d041803_P001 Maize nucleus 44.88 36.35
HORVU4Hr1G017140.2 Barley plastid 45.82 36.25
TraesCS4A01G211700.2 Wheat nucleus, plastid 45.55 36.23
TraesCS4B01G104400.2 Wheat nucleus, plastid 45.55 36.19
TraesCS4D01G101700.1 Wheat nucleus, plastid 45.42 36.0
GSMUA_Achr5P25900_001 Banana nucleus 35.58 27.5
Bra010458.1-P Field mustard nucleus, plastid 22.24 27.36
Bra019159.1-P Field mustard nucleus, plastid 25.07 27.27
Bra029289.1-P Field mustard nucleus 23.58 26.48
Bra013897.1-P Field mustard nucleus 12.53 23.31
PGSC0003DMT400092079 Potato nucleus 22.37 22.46
Protein Annotations
EnsemblPlants:Bra036931.1EnsemblPlants:Bra036931.1-PEnsemblPlantsGene:Bra036931InterPro:LIM-bd/SEUSSPANTHER:PTHR10378PANTHER:PTHR10378:SF16
PFAM:PF01803SEG:segUniParc:UPI000253E684UniProt:M4F771MapMan:35.1:
Description
AT1G43850 (E=9e-118) SEU | SEU (seuss); DNA binding / protein binding / protein heterodimerization/ transcription cofactor
Coordinates
chrScaffold000123:+:72690..75972
Molecular Weight (calculated)
81779.1 Da
IEP (calculated)
9.464
GRAVY (calculated)
-0.751
Length
742 amino acids
Sequence
(BLAST)
001: MVPSEAPNPV GSGDNNVPPP PPPHLPSQPP FPSPLTQFSN NMSMSMPNIS SLLNNNHSFA NGSAESDIGF SGLSSSGQHF SNVSANQQQR SSTKMEPQNF
101: QQQQQQRGGG LAGVKLEPGG GQVSNEQKML RSLGSVKLEP QQLQAMRNLA QVKMEPQHSE QSLFLQQQQQ QQRQFLQMPG QSPQTQMNNI LHQQRLMQLQ
201: HQQHLLKSLP QQRPQLPQQQ RPPMRPVYEP GMGAQRLTQY MYRQQHRPED NNIEFWRKFV SEYFAPNAKK RWCVSMYGSG RQTTGVFPQD VWHCEICNRK
301: PGRGFEATAE VLPRLFKIKY ESGTLEELLY VDMPRESQNS SGQIVLEYAK ATQGSVFEQL RVVRDGQLRI VFSPDLKIFS WEFCARRHEE LIPRRLLIPQ
401: VSQLGFVASA RQLAKALEVP LVNDLGYTKR YVRCLQISEV VNSMKDLIDY SRETRTGPIE SLAKFPRRTG PSSALPGPSA QQPNEQPRQQ QQQSIAQIAN
501: NDQSCGQSSL NYAFNTASAS TSTGSIAGLI HQNSMKQRNQ NAAYKTPSSP YGGNSFQMQS PSNSGTMAPS SQQQQHNLPS FQSPTSSSNN NYPSQNGITS
601: INNHMGSTNL PAIQQAAAAA DEANESSSVQ KILNEILMNN NQAHNTSGGG GHESFGNDGK AGSNVNSSGV LMMNNGQVNT SIGGFGGGMG QSMGMNNING
701: NNGLMNGRAG MMVRDPNGQQ DVGNQRLGAV NAFNNFQCDW NV
Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.