Factsheet for Solyc06g059750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g056620.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43850.1	Solyc05g056620.1.1	AT1G69120.1	16854969

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g059760.2.1	Tomato	nucleus, plastid	76.61	71.49
CDY67669	Canola	mitochondrion, nucleus	18.97	66.81
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	64.56	59.26
KRH64564	Soybean	nucleus, plastid	62.29	57.3
KRH15928	Soybean	nucleus, plastid	61.46	56.28
KRH53367	Soybean	nucleus	63.01	54.94
KRH18102	Soybean	plastid	59.43	53.66
Bra032192.1-P	Field mustard	nucleus, plastid	48.57	52.58
CDY40943	Canola	nucleus, plastid	48.09	52.07
CDY14963	Canola	nucleus, plastid	44.99	51.08
Bra036931.1-P	Field mustard	nucleus, plastid	43.68	49.33
AT1G43850.1	Thale cress	nucleus, plastid	51.55	49.26
GSMUA_Achr10P...	Banana	nucleus, plastid	50.95	48.58
GSMUA_Achr2P20700_001	Banana	plastid	49.05	47.96
GSMUA_Achr6P18610_001	Banana	plastid	48.33	46.23
Os11t0207000-01	Rice	nucleus, plastid	49.76	45.62
TraesCS4A01G211800.1	Wheat	nucleus, plastid	49.16	45.27
TraesCS4D01G101500.1	Wheat	nucleus, plastid	49.05	45.26
Zm00001d007295_P003	Maize	nucleus, plastid	49.28	45.14
Os11t0207100-01	Rice	nucleus	50.0	44.91
TraesCS4B01G104300.1	Wheat	nucleus, plastid	48.69	44.74
TraesCS4B01G104400.2	Wheat	nucleus, plastid	49.76	44.65
TraesCS4A01G211700.2	Wheat	nucleus, plastid	49.64	44.59
Zm00001d023706_P002	Maize	nucleus	48.21	44.54
Zm00001d041803_P001	Maize	nucleus	48.69	44.54
KXG28056	Sorghum	nucleus, plastid	49.76	44.46
TraesCS4D01G101700.1	Wheat	nucleus, plastid	49.64	44.44
GSMUA_Achr3P02850_001	Banana	nucleus	47.49	44.42
Zm00001d049125_P002	Maize	nucleus, plastid	49.28	44.41
HORVU4Hr1G017140.2	Barley	plastid	49.52	44.24
KXG23150	Sorghum	nucleus	48.93	44.23
HORVU4Hr1G017160.3	Barley	nucleus, plastid	48.45	44.03
Solyc03g026190.2.1	Tomato	plastid	25.3	37.59
CDY70167	Canola	cytosol, mitochondrion, nucleus	12.53	36.97
GSMUA_Achr5P25900_001	Banana	nucleus	37.59	32.81
Solyc11g005990.1.1	Tomato	nucleus	21.96	23.2
CDY69476	Canola	nucleus	6.09	18.68

Protein Annotations

EnsemblPlants:Solyc06g059750.2.1	EnsemblPlantsGene:Solyc06g059750.2	InterPro:LIM-bd/SEUSS	ncoils:Coil	PANTHER:PTHR10378	PANTHER:PTHR10378:SF17
PFAM:PF01803	SEG:seg	UniParc:UPI0002765D7D	UniProt:K4C6G2	MapMan:35.1	:

Description

No Description!

Coordinates

chr6:+:37625358..37637006

Molecular Weight (calculated)

91569.6 Da

IEP (calculated)

9.374

GRAVY (calculated)

-0.690

Length

838 amino acids

Sequence
(BLAST)

001: MVPTGPPNPI GGSQSVPASL LRSNSGVMGG QGGSMPSPGG FPSMVSPRTM FGNMHMLGNA SNVSHQSFAN GGPNTGLAGP GSSQRGPVDN GAESDPLSGV
101: GNGMGFSAPS TSFMSSAMVT NPDSSRVQGQ QFPNPAGNHM LTDQQRSQQL DSQNFQHNQQ LQQFPSPINS QAQQQQHQFQ SMRGGLGSLA PVKMETQVTN
201: DQTPQQLQAL RNLAPVKMEP QQIQSMRGLA PVKVEQQQSD PSLFLHQQQQ QQFLQMSRQS PQAAAAAQLL HQQRLMQFQH HHQLLKTAPQ QRNPLQQQFQ
301: PQNLAVRPPV KPVYEPGMCA RRLTHYMYQQ QHRPEDNNIE FWRKFVAEYF APNAKKKWCV SMYGSGRQTT GVFPQDVWHC EICSRKPGRG FEATAEVLPR
401: LFKIKYESGT LEELLYVDMP REYQNSSGQI VLDYAKAIQE SVFEQLRVVR DGQLRLVFSQ PDLKIVSWEF CARRHEELIP RRLLIPQVNQ LGAAAQKYQA
501: ATQNASSSAS VSELQNNCNM FVASARQLAK ALEVPLVNDL GYTKRYVRCL QISEVVNSMK DLIDYSRETG TGPMESLAKF PRRNGSSAGV QGPVQSTEDQ
601: QQQQQQQQQQ QQQQQQQHTH QTVNSSNHET TSQSGVPPLP LSNGMSNVNN SVNQVPATSS SGTVVGLLHQ NSMNSRQQNP VNGGSSTYSG NAVQMPSPNS
701: SSTMPQSQPN SSQFQSPTPS SSNNPPQAVH SGLSSVQHMN SANSPKITMQ NGTANANNTG IGSGFGSMNN GLGQAAMVNG MRAALGNNPS AMNGLVGMTM
801: VREHNMSQQQ QDLGNQLLSG LEAVNGFNNL QFDWKTSP

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.