Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0752800-02 | |
| Os07t0108900-02 | |
| Os07t0605200-01 | |
| Os12t0501700-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43850.1 | Os03t0752800-02 | AT1G69120.1 | 16854969 |
| AT1G43850.1 | Os07t0108900-02 | AT1G69120.1 | 16854969 |
| AT1G43850.1 | Os07t0605200-01 | AT1G69120.1 | 16854969 |
| AT1G43850.1 | Os12t0501700-00 | AT1G69120.1 | 16854969 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0207000-01 | Rice | nucleus, plastid | 94.21 | 96.17 |
| TraesCS4D01G101500.1 | Wheat | nucleus, plastid | 81.67 | 83.92 |
| TraesCS4A01G211800.1 | Wheat | nucleus, plastid | 81.56 | 83.63 |
| TraesCS4B01G104300.1 | Wheat | nucleus, plastid | 81.56 | 83.44 |
| TraesCS4D01G101700.1 | Wheat | nucleus, plastid | 83.28 | 83.01 |
| TraesCS4B01G104400.2 | Wheat | nucleus, plastid | 83.07 | 82.98 |
| TraesCS4A01G211700.2 | Wheat | nucleus, plastid | 82.64 | 82.64 |
| KXG28056 | Sorghum | nucleus, plastid | 82.64 | 82.2 |
| HORVU4Hr1G017140.2 | Barley | plastid | 82.53 | 82.09 |
| HORVU4Hr1G017160.3 | Barley | nucleus, plastid | 80.71 | 81.67 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 80.71 | 80.97 |
| Zm00001d007295_P003 | Maize | nucleus, plastid | 79.31 | 80.87 |
| CDY67669 | Canola | mitochondrion, nucleus | 15.11 | 59.24 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 51.13 | 54.45 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 51.45 | 52.57 |
| KRH64564 | Soybean | nucleus, plastid | 50.16 | 51.37 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 48.23 | 50.11 |
| KRH15928 | Soybean | nucleus, plastid | 49.09 | 50.05 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 44.91 | 50.0 |
| KRH53367 | Soybean | nucleus | 50.8 | 49.32 |
| KRH18102 | Soybean | plastid | 48.87 | 49.14 |
| CDY14963 | Canola | nucleus, plastid | 38.69 | 48.92 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 40.19 | 48.45 |
| CDY40943 | Canola | nucleus, plastid | 39.66 | 47.8 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 37.3 | 46.9 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 42.55 | 45.27 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 41.16 | 44.04 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 11.68 | 38.38 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 39.12 | 38.02 |
| CDY69476 | Canola | nucleus | 7.61 | 26.01 |
| Os06t0126000-02 | Rice | cytosol, nucleus | 20.79 | 23.6 |
| PGSC0003DMT400092079 | Potato | nucleus | 18.01 | 22.73 |
Protein Annotations
| EMBL:AK065129 | EnsemblPlants:Os11t0207100-01 | EnsemblPlantsGene:Os11g0207100 | EntrezGene:4350032 | InterPro:LIM-bd/SEUSS | ncoils:Coil |
| PANTHER:PTHR10378 | PANTHER:PTHR10378:SF17 | PFAM:PF01803 | ProteinID:ABA91997.2 | ProteinID:BAF27826.1 | ProteinID:BAT13134.1 |
| ProteinID:BAT13135.1 | RefSeq:XP_015616772.1 | SEG:seg | UniParc:UPI00000A0EB2 | UniProt:Q2R939 | MapMan:35.1 |
Description
Similar to SEU3A protein. (Os11t0207100-01)
Coordinates
chr11:+:5419433..5427714
Molecular Weight (calculated)
101308.0 Da
IEP (calculated)
8.859
GRAVY (calculated)
-0.736
Length
933 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPSGPPNPM GPGQPVGAAS LLRTSSSLLS GGQQGMGSGG GMLPSQSPFS SLVSPRTQFG ANGLLGGGSN VSSLLNRPFG NGGHMLGPGS MPGGGGLPMN
101: TLQQQRGGLD GAGDLVGAGG SDSLSFPSSS QVSLGNQLGS DNLHPPPQHQ QQQQHLDAMQ DLQHQHQHQQ QLPMSYNQQQ LPPQPPQQPQ ATVKLENGGS
201: TGGVKLEPQM GQPDQNSTAQ MMRNASNVKI EPPQLQALRS LSAVKMEQQS SDPSAFLQQQ QQQQHLLQLT KQNPQAAAAA QLNLLQQQRI LQMQQQQQQQ
301: QQILKNLPLQ RNQLQQQQQQ QQQQQQLLRQ QSLNMRTPGK SAPYEPGTCA KRLTHYMYHQ QNRPQDNNIE YWRNFVNEYF SPNAKKRWCV SLYGSGRQTT
401: GVFPQDVWHC EICNRKPGRG FETTVEVLPR LCQIKYASGT LEELLYVDMP RESQNASGQI VLDYTKAIQE SVFEQLRVVR EGHLRIVFNP DLKIASWEFC
501: ARRHEELIPR RSIIPQVSQL GAVVQKYQSA VQNSTNLSTQ DMQNNCNSFV ACARQLAKAL EVPLVNDLGY TKRYVRCLQI AEVVNCMKDL IDYSRQNGSG
601: PIASLHSFPR RTSSGGVNPQ QSQQQQPEEQ QSIPQSSNQS GQNAAPMTGV QASASANADV TSNNSLSCAP STSAPSPSVV GLLQGSMNSR QDHPMSSANG
701: PYTSGNSAAI PKVNSTTSLQ STPSTSFPSP VPTTSNNNMM PAPQNTNQLS SPTASSNLPP MQPPATRPQE PDPNESQSSV QRILQDLMMS PQMNGVGQLG
801: NDMKRPNGLT SSVNGVNCLV GNAVTNNSGM GGMGFGAMGG LGPNHAASGL RTAIANNAMA ISGRMGMNHS AHDLSQLGQL QQQQQHQHQH QHQHQQQQQQ
901: QQQQQHDLGN QLLSGLRAAN SFNNLQYDWK PSQ
101: TLQQQRGGLD GAGDLVGAGG SDSLSFPSSS QVSLGNQLGS DNLHPPPQHQ QQQQHLDAMQ DLQHQHQHQQ QLPMSYNQQQ LPPQPPQQPQ ATVKLENGGS
201: TGGVKLEPQM GQPDQNSTAQ MMRNASNVKI EPPQLQALRS LSAVKMEQQS SDPSAFLQQQ QQQQHLLQLT KQNPQAAAAA QLNLLQQQRI LQMQQQQQQQ
301: QQILKNLPLQ RNQLQQQQQQ QQQQQQLLRQ QSLNMRTPGK SAPYEPGTCA KRLTHYMYHQ QNRPQDNNIE YWRNFVNEYF SPNAKKRWCV SLYGSGRQTT
401: GVFPQDVWHC EICNRKPGRG FETTVEVLPR LCQIKYASGT LEELLYVDMP RESQNASGQI VLDYTKAIQE SVFEQLRVVR EGHLRIVFNP DLKIASWEFC
501: ARRHEELIPR RSIIPQVSQL GAVVQKYQSA VQNSTNLSTQ DMQNNCNSFV ACARQLAKAL EVPLVNDLGY TKRYVRCLQI AEVVNCMKDL IDYSRQNGSG
601: PIASLHSFPR RTSSGGVNPQ QSQQQQPEEQ QSIPQSSNQS GQNAAPMTGV QASASANADV TSNNSLSCAP STSAPSPSVV GLLQGSMNSR QDHPMSSANG
701: PYTSGNSAAI PKVNSTTSLQ STPSTSFPSP VPTTSNNNMM PAPQNTNQLS SPTASSNLPP MQPPATRPQE PDPNESQSSV QRILQDLMMS PQMNGVGQLG
801: NDMKRPNGLT SSVNGVNCLV GNAVTNNSGM GGMGFGAMGG LGPNHAASGL RTAIANNAMA ISGRMGMNHS AHDLSQLGQL QQQQQHQHQH QHQHQQQQQQ
901: QQQQQHDLGN QLLSGLRAAN SFNNLQYDWK PSQ
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.