Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- peroxisome 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67669 | Canola | mitochondrion, nucleus | 12.5 | 50.42 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 38.75 | 42.32 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 38.12 | 41.78 |
| GSMUA_Achr2P20700_001 | Banana | plastid | 36.25 | 40.61 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 38.54 | 40.53 |
| Os11t0207000-01 | Rice | nucleus, plastid | 38.12 | 40.04 |
| Os11t0207100-01 | Rice | nucleus | 38.02 | 39.12 |
| KRH64564 | Soybean | nucleus, plastid | 36.67 | 38.64 |
| TraesCS4D01G101500.1 | Wheat | nucleus, plastid | 36.46 | 38.55 |
| Zm00001d007295_P003 | Maize | nucleus, plastid | 36.67 | 38.47 |
| TraesCS4A01G211800.1 | Wheat | nucleus, plastid | 36.46 | 38.46 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 37.19 | 38.39 |
| KXG28056 | Sorghum | nucleus, plastid | 37.4 | 38.27 |
| TraesCS4B01G104300.1 | Wheat | nucleus, plastid | 36.35 | 38.27 |
| HORVU4Hr1G017160.3 | Barley | nucleus, plastid | 36.67 | 38.18 |
| KRH15928 | Soybean | nucleus, plastid | 36.15 | 37.92 |
| TraesCS4B01G104400.2 | Wheat | nucleus, plastid | 36.88 | 37.9 |
| HORVU4Hr1G017140.2 | Barley | plastid | 36.98 | 37.85 |
| TraesCS4A01G211700.2 | Wheat | nucleus, plastid | 36.77 | 37.83 |
| Zm00001d023706_P002 | Maize | nucleus | 35.73 | 37.82 |
| GSMUA_Achr3P02850_001 | Banana | nucleus | 35.21 | 37.72 |
| TraesCS4D01G101700.1 | Wheat | nucleus, plastid | 36.77 | 37.71 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 32.81 | 37.59 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 35.1 | 37.53 |
| CDY40943 | Canola | nucleus, plastid | 30.1 | 37.34 |
| KRH18102 | Soybean | plastid | 36.04 | 37.28 |
| Zm00001d041803_P001 | Maize | nucleus | 35.31 | 37.01 |
| KXG23150 | Sorghum | nucleus | 35.52 | 36.79 |
| CDY14963 | Canola | nucleus, plastid | 28.23 | 36.72 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 29.58 | 36.69 |
| KRH53367 | Soybean | nucleus | 36.67 | 36.63 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 27.5 | 35.58 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 31.15 | 34.29 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 30.62 | 33.52 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 7.92 | 26.76 |
| GSMUA_Achr1P16220_001 | Banana | nucleus | 17.92 | 24.61 |
| GSMUA_Achr10P... | Banana | nucleus | 19.06 | 23.61 |
| GSMUA_Achr1P07930_001 | Banana | nucleus | 19.17 | 23.17 |
| GSMUA_Achr2P03310_001 | Banana | nucleus | 18.54 | 22.06 |
| PGSC0003DMT400092079 | Potato | nucleus | 14.9 | 19.35 |
| GSMUA_Achr7P05870_001 | Banana | nucleus | 5.42 | 18.18 |
| CDY69476 | Canola | nucleus | 5.1 | 17.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P25900_001 | EnsemblPlants:GSMUA_Achr5T25900_001 | EnsemblPlantsGene:GSMUA_Achr5G25900_001 | InterPro:LIM-bd/SEUSS | ncoils:Coil | PANTHER:PTHR10378 |
| PANTHER:PTHR10378:SF17 | PFAM:PF01803 | SEG:seg | UniParc:UPI000295591E | UniProt:M0T1R5 | MapMan:35.1 |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G25900_001]
Coordinates
chr5:+:26874682..26883407
Molecular Weight (calculated)
106906.0 Da
IEP (calculated)
7.986
GRAVY (calculated)
-0.524
Length
960 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRSGAPRPG KRSRSIPPSP LRRNSGRPVG NHAESAPSRQ HTSSLVTPSP NLDTSSNMSF LNDTSTVSSL PDHSSGGGRP VAAGGLMATS RNFQQQSGGG
101: GALDVLGPAK FDPRAFTSTS PTAQGQQPHN LYSSRMSLDH SQPDQLNMMQ NYQGSSSMPH MQRQTELREG LGNFGSAAFV NMEPQNGPLQ HSQSPCHTGT
201: VNLEPHQVHS GRGLGPGKME SEHSYSALFL QQQQEQQLFK KPRPRPKAAY EHISMQQQQL LQMPGPPSQA ASAQISPQQQ QILRSIPQQQ DQLQAVEPKV
301: KSTLYEPGIC ARHLTHYMYR KQHRPHDNNI GFWRELVAEY FTPNAKRRWC VSLYENGPQT TGVFPQDIWQ CEICNRKPAR GVVTNVEVLP RLLQIKYASG
401: ILEELLYVDM PQEYQNAAGQ IVLQYAKAVQ ESVFEQLRVA REGHLRIVFS PELKICSWEF CARHHEEFIP RRLFMPQVNR LNALVQEYQN SVQNSTFGLS
501: AWELERTCKF NISCLIEIRF SDLALICTKD LFLSHIYMYT YKNITYTNSY LGMYLHVDMH MHIVLYTCIY TMIFYMVHET KMPTDYSGFH SLNALGQVKS
601: PVYRIQRKLL EKKRKVHVMN SNDVKDVVLL METAGQLVKA LEVPVVNDLA NKKCYLRCLQ ILEVLDSMKD LIDYSIQTGT GPIDSLINFP KRTASSSVLH
701: SQQVQQPDVQ QTIPQYTSQC DQTSAYATGV QLLSASGSLT SVANTLNNLP STCTTTTTAG LRQNSLNSRQ DNRSSNVNGP HTGNTVPIPP ASSISLRQSQ
801: PNVFPRTPSS IPSTSNNFLT SSDNIGHLDS VNSPVIASTM KQPLTESQED DPTESPSVDR TLQEMMTSQR TGVSSLGHQG VSGTGSGITG EIRPLKTAGT
901: SRGEMAKNTV AMNEQAGINY RSNDPSDVIH QQQEDMNRLF DGLEPLDNFD ILQLIQELSQ
101: GALDVLGPAK FDPRAFTSTS PTAQGQQPHN LYSSRMSLDH SQPDQLNMMQ NYQGSSSMPH MQRQTELREG LGNFGSAAFV NMEPQNGPLQ HSQSPCHTGT
201: VNLEPHQVHS GRGLGPGKME SEHSYSALFL QQQQEQQLFK KPRPRPKAAY EHISMQQQQL LQMPGPPSQA ASAQISPQQQ QILRSIPQQQ DQLQAVEPKV
301: KSTLYEPGIC ARHLTHYMYR KQHRPHDNNI GFWRELVAEY FTPNAKRRWC VSLYENGPQT TGVFPQDIWQ CEICNRKPAR GVVTNVEVLP RLLQIKYASG
401: ILEELLYVDM PQEYQNAAGQ IVLQYAKAVQ ESVFEQLRVA REGHLRIVFS PELKICSWEF CARHHEEFIP RRLFMPQVNR LNALVQEYQN SVQNSTFGLS
501: AWELERTCKF NISCLIEIRF SDLALICTKD LFLSHIYMYT YKNITYTNSY LGMYLHVDMH MHIVLYTCIY TMIFYMVHET KMPTDYSGFH SLNALGQVKS
601: PVYRIQRKLL EKKRKVHVMN SNDVKDVVLL METAGQLVKA LEVPVVNDLA NKKCYLRCLQ ILEVLDSMKD LIDYSIQTGT GPIDSLINFP KRTASSSVLH
701: SQQVQQPDVQ QTIPQYTSQC DQTSAYATGV QLLSASGSLT SVANTLNNLP STCTTTTTAG LRQNSLNSRQ DNRSSNVNGP HTGNTVPIPP ASSISLRQSQ
801: PNVFPRTPSS IPSTSNNFLT SSDNIGHLDS VNSPVIASTM KQPLTESQED DPTESPSVDR TLQEMMTSQR TGVSSLGHQG VSGTGSGITG EIRPLKTAGT
901: SRGEMAKNTV AMNEQAGINY RSNDPSDVIH QQQEDMNRLF DGLEPLDNFD ILQLIQELSQ
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.