Factsheet for VIT_04s0044g01260.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	60.09	57.39
GSMUA_Achr10P...	Banana	nucleus, plastid	47.25	46.87
GSMUA_Achr2P20700_001	Banana	plastid	45.18	45.97
GSMUA_Achr6P18610_001	Banana	plastid	44.72	44.52
GSMUA_Achr3P02850_001	Banana	nucleus	44.95	43.75
Os11t0207000-01	Rice	nucleus, plastid	44.27	42.23
TraesCS4D01G101500.1	Wheat	nucleus, plastid	43.12	41.41
TraesCS4A01G211800.1	Wheat	nucleus, plastid	43.0	41.21
Os11t0207100-01	Rice	nucleus	44.04	41.16
TraesCS4B01G104400.2	Wheat	nucleus, plastid	44.04	41.11
TraesCS4D01G101700.1	Wheat	nucleus, plastid	44.04	41.03
TraesCS4B01G104300.1	Wheat	nucleus, plastid	42.89	41.01
TraesCS4A01G211700.2	Wheat	nucleus, plastid	43.69	40.84
KXG28056	Sorghum	nucleus, plastid	43.92	40.83
Zm00001d007295_P003	Maize	nucleus, plastid	42.78	40.77
HORVU4Hr1G017160.3	Barley	nucleus, plastid	43.0	40.67
Zm00001d049125_P002	Maize	nucleus, plastid	43.12	40.43
HORVU4Hr1G017140.2	Barley	plastid	43.46	40.41
Zm00001d023706_P002	Maize	nucleus	41.51	39.91
KXG23150	Sorghum	nucleus	41.97	39.48
Zm00001d041803_P001	Maize	nucleus	41.4	39.41
GSMUA_Achr5P25900_001	Banana	nucleus	34.29	31.15
VIT_02s0025g04390.t01	Wine grape	vacuole	22.36	28.38
VIT_16s0100g00500.t01	Wine grape	plastid	27.52	27.78
PGSC0003DMT400092079	Potato	nucleus	17.43	20.57

Protein Annotations

EntrezGene:100266085	wikigene:100266085	MapMan:35.1	EMBL:AM438416	ProteinID:CAN60690	ProteinID:CAN60690.1
ProteinID:CBI37542	ProteinID:CBI37542.3	UniProt:D7U4E5	EMBL:FN596506	InterPro:LIM-bd/SEUSS	EntrezGene:LOC100266085
wikigene:LOC100266085	PFAM:PF01803	PANTHER:PTHR10378	PANTHER:PTHR10378:SF17	UniParc:UPI00015CBB8A	ArrayExpress:VIT_04s0044g01260
EnsemblPlantsGene:VIT_04s0044g01260	EnsemblPlants:VIT_04s0044g01260.t01	unigene:Vvi.5364	RefSeq:XP_002274393	RefSeq:XP_002274393.1	RefSeq:XP_010649376.1
RefSeq:XP_010649377.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:22755236..22766461

Molecular Weight (calculated)

95249.5 Da

IEP (calculated)

7.719

GRAVY (calculated)

-0.603

Length

872 amino acids

Sequence
(BLAST)

001: MMPSGPSTSI GGSQSASAAL LRSNSGILAQ GGPQGAYSSL SSVRPQYDMN LVGNAQNISS GLSQSLGSGG SNSGLSHSGS FQHGGLDTGP EFDALSIAAN
101: DIAFAPPAAS FPQLNSGNPG SSSQVQNQHP LNSSGNQVLP DQLQSQLQQL ERQKFHHGQQ LLQQFSQQQL HQLHPQQQPY QATQGGSGGV GVNDQNCPQQ
201: QLQLSQQNQV GRGIPPVKIQ PNRLDQQMFL QQQQQRQQFL HMSRQSSHAT AAQLNLLQQQ RLLQLQQQKQ QQQLLKATQQ QPQLQPQFQQ PNLPAKLVYE
301: PGMCAQRLTQ YMIQQKHRPD GNNIEFWQKF VAEFFAPNAK KRWCISQYGN NRQTNSPFPQ DVWHCEICNR RPGRGFETTF EVLPRLCKIK YDSGTLEELL
401: YFDMPHEYQD AAGQIVLDFA KAVQESVFEQ LRVVRDGQLR IVFSPDLKIC SWLFCARHHE ELIPRRSIIP QVSQLGVVAQ KYHAAAQNPS NISMQELKNN
501: CNTFVSSARQ LAKALEVPLV NDLGYTKRFV RCLQISEVVN CMKDLIDYSR ETEKGPIECL AEFPRRSSRS SGMHNQLEEE QHLQQQNTRQ RMNNDDYALR
601: GSATQVSACN GVPSVSNGHS ITSTSTSATA IVGLLCQNSM NSRHENQMNN PNSPFSATPG QIPSAGSSTT PPSTQLNPSS PFSCLTPSSS HNPTPLSQTV
701: LTAEATANHI TSENSPTNIL FQKSSESNEA DPNEHLSSVE RIIQEIMSSS QFNSAGSMIS VGSVGNNVKN GSGMTQINHS SIGGGDSTMG SRINSNSSVG
801: AAGFGNFDGG IGVSATVNRI RATMGNNSMT SSVEVGMPSM PQDVTMNNKQ QDMKSLNGVG GGLNDFNNLR FN

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.