Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P20700_001 | Banana | plastid | 68.19 | 71.3 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 65.4 | 66.67 |
| CDY67669 | Canola | mitochondrion, nucleus | 15.07 | 56.72 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 51.79 | 52.97 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 53.57 | 52.57 |
| KRH64564 | Soybean | nucleus, plastid | 52.01 | 51.15 |
| KRH15928 | Soybean | nucleus, plastid | 50.56 | 49.51 |
| KRH53367 | Soybean | nucleus | 52.01 | 48.49 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 48.55 | 48.44 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 44.42 | 47.49 |
| KRH18102 | Soybean | plastid | 49.11 | 47.41 |
| CDY40943 | Canola | nucleus, plastid | 39.96 | 46.25 |
| CDY14963 | Canola | nucleus, plastid | 37.95 | 46.07 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 37.95 | 45.82 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 38.84 | 44.96 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 43.75 | 44.95 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 42.63 | 43.56 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 11.5 | 36.27 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 37.72 | 35.21 |
| GSMUA_Achr1P16220_001 | Banana | nucleus | 22.99 | 29.47 |
| GSMUA_Achr1P07930_001 | Banana | nucleus | 26.0 | 29.35 |
| GSMUA_Achr10P... | Banana | nucleus | 25.22 | 29.16 |
| GSMUA_Achr2P03310_001 | Banana | nucleus | 23.77 | 26.39 |
| GSMUA_Achr7P05870_001 | Banana | nucleus | 8.26 | 25.87 |
| CDY69476 | Canola | nucleus | 7.25 | 23.81 |
| PGSC0003DMT400092079 | Potato | nucleus | 17.52 | 21.24 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P02850_001 | EnsemblPlants:GSMUA_Achr3T02850_001 | EnsemblPlantsGene:GSMUA_Achr3G02850_001 | InterPro:LIM-bd/SEUSS | ncoils:Coil | PANTHER:PTHR10378 |
| PANTHER:PTHR10378:SF17 | PFAM:PF01803 | SEG:seg | UniParc:UPI0002949B26 | UniProt:M0SBA3 | MapMan:35.1 |
Description
Putative Transcriptional corepressor SEUSS [Source:GMGC_GENE;Acc:GSMUA_Achr3G02850_001]
Coordinates
chr3:+:1848793..1859388
Molecular Weight (calculated)
97834.8 Da
IEP (calculated)
8.780
GRAVY (calculated)
-0.486
Length
896 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPSGSSTPI GGSQSVNPSL LRSNSGLLGG QPGSIPSQPP FSSLVSPRTQ FNSNSLLGNI SNFSPLNNSF GNGGPSGALS ASPMNLQQRG GLGGAVGMVG
101: SAESNPLSFT SSLGQSQGQQ QCFQNPSNSQ LGPDQLQSRI DAVQNFQQQF SIPQNQQQQQ QQLLRGGLSN IGHMGPVKME PQMGPVKLEP QMGPNDQIGP
201: SQQLQTLRAI GTVKMESQQL QSLRSLGPQQ QILQLSRQNS QQQQQQQQQQ QQQQQQQQQI VKTLPQQRNQ LQQQLLQHHL LGRPPVKSTI YEPGMCARRL
301: TQYMYHQQHR PQDNNIEFWR KFVAEYFAPN AKKRWCVSLC GSGRQTTGVL PQDVWHCEIC NHKPGRGFET TVEVFPRLFQ IKYASGTLEE LLYIDMPREY
401: QNASGQIVLD YAKAIQESVF EQLRVVRDGQ LRIVFNPDLK ISSWEFCARR HEELIPRRVI IPQVSQLSAV VQRYQAAAQN ASSGLSTQDL QNTCNSFVAS
501: TRQMAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSKETQAGPV ASLSNFPRRT SSGLQPRQPE QQQSITQNSD HNNQSSVHAT SVLLSAGCNN
601: VDGDNSLNAA SSTHAATIIG TLQPNSTNTR QENQMNTANS PYGGNNVQIP SASSSSSLAP SQPNPSSTFS SLKPASSNNP TPTSHNATHL SSSCSPASLS
701: AMQQPTAQLH EMDPNDPQSS VQQILQELMM SSQLNGVSSL GNDMKMINGI TPTLNGGNCL VGNGISNNSA MSGTGFAGAG GIGLSVAASG MRAAIANSAM
801: TMNGRVGMNY LSQDPIAMNH QQQDIGNRLL DKLGAVNGFD NLQFDWKPSP FLVLLVVICL FLKRKYMMAL IRSDDSHPLL KDLYITIMTQ LFLFWQ
101: SAESNPLSFT SSLGQSQGQQ QCFQNPSNSQ LGPDQLQSRI DAVQNFQQQF SIPQNQQQQQ QQLLRGGLSN IGHMGPVKME PQMGPVKLEP QMGPNDQIGP
201: SQQLQTLRAI GTVKMESQQL QSLRSLGPQQ QILQLSRQNS QQQQQQQQQQ QQQQQQQQQI VKTLPQQRNQ LQQQLLQHHL LGRPPVKSTI YEPGMCARRL
301: TQYMYHQQHR PQDNNIEFWR KFVAEYFAPN AKKRWCVSLC GSGRQTTGVL PQDVWHCEIC NHKPGRGFET TVEVFPRLFQ IKYASGTLEE LLYIDMPREY
401: QNASGQIVLD YAKAIQESVF EQLRVVRDGQ LRIVFNPDLK ISSWEFCARR HEELIPRRVI IPQVSQLSAV VQRYQAAAQN ASSGLSTQDL QNTCNSFVAS
501: TRQMAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSKETQAGPV ASLSNFPRRT SSGLQPRQPE QQQSITQNSD HNNQSSVHAT SVLLSAGCNN
601: VDGDNSLNAA SSTHAATIIG TLQPNSTNTR QENQMNTANS PYGGNNVQIP SASSSSSLAP SQPNPSSTFS SLKPASSNNP TPTSHNATHL SSSCSPASLS
701: AMQQPTAQLH EMDPNDPQSS VQQILQELMM SSQLNGVSSL GNDMKMINGI TPTLNGGNCL VGNGISNNSA MSGTGFAGAG GIGLSVAASG MRAAIANSAM
801: TMNGRVGMNY LSQDPIAMNH QQQDIGNRLL DKLGAVNGFD NLQFDWKPSP FLVLLVVICL FLKRKYMMAL IRSDDSHPLL KDLYITIMTQ LFLFWQ
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.