Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400072888 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43850.1 | PGSC0003DMT400072888 | AT1G69120.1 | 16854969 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g005990.1.1 | Tomato | nucleus | 70.77 | 65.95 |
| CDY67669 | Canola | mitochondrion, nucleus | 7.71 | 23.95 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 22.46 | 22.37 |
| CDY14963 | Canola | nucleus, plastid | 21.79 | 21.82 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 22.6 | 21.58 |
| CDY40943 | Canola | nucleus, plastid | 21.79 | 20.8 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 7.98 | 20.77 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 22.87 | 19.29 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 23.82 | 19.28 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 22.73 | 19.16 |
| KRH15928 | Soybean | nucleus, plastid | 23.68 | 19.13 |
| Zm00001d041803_P001 | Maize | nucleus | 23.27 | 18.78 |
| Os11t0207000-01 | Rice | nucleus, plastid | 23.14 | 18.71 |
| KXG23150 | Sorghum | nucleus | 23.14 | 18.45 |
| TraesCS4A01G211800.1 | Wheat | nucleus, plastid | 22.6 | 18.35 |
| KRH64564 | Soybean | nucleus, plastid | 22.6 | 18.33 |
| GSMUA_Achr2P20700_001 | Banana | plastid | 21.24 | 18.32 |
| KRH18102 | Soybean | plastid | 23.0 | 18.32 |
| TraesCS4B01G104300.1 | Wheat | nucleus, plastid | 22.6 | 18.31 |
| Zm00001d023706_P002 | Maize | nucleus | 22.46 | 18.3 |
| TraesCS4D01G101500.1 | Wheat | nucleus, plastid | 22.46 | 18.28 |
| Zm00001d007295_P003 | Maize | nucleus, plastid | 22.6 | 18.25 |
| Os11t0207100-01 | Rice | nucleus | 22.73 | 18.01 |
| TraesCS4A01G211700.2 | Wheat | nucleus, plastid | 22.6 | 17.9 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 22.46 | 17.85 |
| KXG28056 | Sorghum | nucleus, plastid | 22.6 | 17.8 |
| TraesCS4B01G104400.2 | Wheat | nucleus, plastid | 22.46 | 17.77 |
| TraesCS4D01G101700.1 | Wheat | nucleus, plastid | 22.46 | 17.73 |
| HORVU4Hr1G017140.2 | Barley | plastid | 22.46 | 17.7 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 20.97 | 17.63 |
| GSMUA_Achr3P02850_001 | Banana | nucleus | 21.24 | 17.52 |
| KRH53367 | Soybean | nucleus | 22.73 | 17.48 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 20.57 | 17.43 |
| HORVU4Hr1G017160.3 | Barley | nucleus, plastid | 21.65 | 17.35 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 19.35 | 14.9 |
| PGSC0003DMT400037024 | Potato | plastid | 18.27 | 14.74 |
| CDY69476 | Canola | nucleus | 3.79 | 10.26 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400092079 | EnsemblPlantsGene:PGSC0003DMG400041650 | InterPro:LIM-bd/SEUSS | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF12 | PFAM:PF01803 |
| PGSC:PGSC0003DMG400041650 | SEG:seg | UniParc:UPI00029574C2 | UniProt:M1DP13 | MapMan:35.1 | : |
Description
Transcriptional corepressor SEUSS [Source:PGSC_GENE;Acc:PGSC0003DMG400041650]
Coordinates
chr11:+:6684290..6689331
Molecular Weight (calculated)
82703.7 Da
IEP (calculated)
6.869
GRAVY (calculated)
-0.449
Length
739 amino acids
Sequence
(BLAST)
(BLAST)
001: MANDNILLSP SAPLPEDQNV VAQPQHVPRP RHRPLKFKQI QDSSVSEKPF HSGNIISFGH SDPQGLFGSS GVSLQDNPKS LENLDKETTM SRPAPNHHIT
101: TNKEASAVII KQESFVAPLF PEYTFRNEKK KLLEDAFAPT FSLMKLAYQQ GMLSSSRLRF QENAKILEAL DKERSMYRPG QTVLQSLEHH IAKNKEDGAV
201: ETNCECLVPP TILEESLRKG KQKLIEESFP PTFPQMNVAS QLPSASLTNG PCPSRASQLN LLWLLQKKMQ LSRTYEKLPA VVPDDNNIEF WMNLVAEFFA
301: PNAKKRLCLS SNERRQLIGC IFPKISAEVL PRLCKLKYET GMLDELLYMD IPEESYTPSG HIVLNYPKVT EQTVYEAGRV VREGRLRIVF SADLKVHQLK
401: EAIQKYQVFA ESSSRISPEE FQRTSNKFAP TIRELARTLD KSLINDLGYP KRYVRCLQIS EIVSSMKDLM DYSKKYGIGP REAMAMIHRE SAAVRVTQNS
501: VAERVPQQHI DDVISQHSSV ISFAPYPSTD EGTRSLNCSS PHATSPTSST ASSKRLVVHQ ADLVEPKRMK QMTNSGEKSV LRAPTEPVLN QSISTTHPSS
601: FIRPPIVQPS VIVPSSTTSI EPNEYISSTV KVEQDLVTSQ NLAVAAADAT IDTKLVLDQN ENIGKYLYGF ETDGTVGKGY YMDQLENLNG ASLFPGIHIE
701: PPLSGTLMVN DTRSNNQQII DQLPYLNGKM DPIDDIQFE
101: TNKEASAVII KQESFVAPLF PEYTFRNEKK KLLEDAFAPT FSLMKLAYQQ GMLSSSRLRF QENAKILEAL DKERSMYRPG QTVLQSLEHH IAKNKEDGAV
201: ETNCECLVPP TILEESLRKG KQKLIEESFP PTFPQMNVAS QLPSASLTNG PCPSRASQLN LLWLLQKKMQ LSRTYEKLPA VVPDDNNIEF WMNLVAEFFA
301: PNAKKRLCLS SNERRQLIGC IFPKISAEVL PRLCKLKYET GMLDELLYMD IPEESYTPSG HIVLNYPKVT EQTVYEAGRV VREGRLRIVF SADLKVHQLK
401: EAIQKYQVFA ESSSRISPEE FQRTSNKFAP TIRELARTLD KSLINDLGYP KRYVRCLQIS EIVSSMKDLM DYSKKYGIGP REAMAMIHRE SAAVRVTQNS
501: VAERVPQQHI DDVISQHSSV ISFAPYPSTD EGTRSLNCSS PHATSPTSST ASSKRLVVHQ ADLVEPKRMK QMTNSGEKSV LRAPTEPVLN QSISTTHPSS
601: FIRPPIVQPS VIVPSSTTSI EPNEYISSTV KVEQDLVTSQ NLAVAAADAT IDTKLVLDQN ENIGKYLYGF ETDGTVGKGY YMDQLENLNG ASLFPGIHIE
701: PPLSGTLMVN DTRSNNQQII DQLPYLNGKM DPIDDIQFE
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.