Factsheet for Zm00001d023706_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007949_P001
Zm00001d013259_P002
Zm00001d018667_P003
Zm00001d022088_P004
Zm00001d023736_P001
Zm00001d034045_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43850.1	Zm00001d007949_P001	AT1G69120.1	16854969
AT1G43850.1	Zm00001d013259_P002	AT1G69120.1	16854969
AT1G43850.1	Zm00001d018667_P003	AT1G69120.1	16854969
AT1G43850.1	Zm00001d022088_P004	AT1G69120.1	16854969
AT1G43850.1	Zm00001d023736_P001	AT1G69120.1	16854969
AT1G43850.1	Zm00001d034045_P003	AT1G69120.1	16854969

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041803_P001	Maize	nucleus	91.4	90.5
Zm00001d007295_P003	Maize	nucleus, plastid	69.79	69.18
Zm00001d049125_P002	Maize	nucleus, plastid	70.78	69.03
CDY67669	Canola	mitochondrion, nucleus	15.21	57.98
GSMUA_Achr6P18610_001	Banana	plastid	49.39	51.14
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	51.38	51.04
KRH64564	Soybean	nucleus, plastid	49.06	48.85
Solyc06g059750.2.1	Tomato	nucleus, plastid	44.54	48.21
KRH15928	Soybean	nucleus, plastid	48.29	47.87
Solyc06g059760.2.1	Tomato	nucleus, plastid	47.3	47.77
KRH18102	Soybean	plastid	48.18	47.09
CDY14963	Canola	nucleus, plastid	38.04	46.75
KRH53367	Soybean	nucleus	49.17	46.41
Bra032192.1-P	Field mustard	nucleus, plastid	39.14	45.87
CDY40943	Canola	nucleus, plastid	38.59	45.22
Bra036931.1-P	Field mustard	nucleus, plastid	36.38	44.47
AT1G43850.1	Thale cress	nucleus, plastid	41.12	42.53
VIT_04s0044g01260.t01	Wine grape	plastid	39.91	41.51
GSMUA_Achr5P25900_001	Banana	nucleus	37.82	35.73
CDY70167	Canola	cytosol, mitochondrion, nucleus	10.8	34.51
Zm00001d035990_P002	Maize	plastid	22.27	25.9
Zm00001d045516_P006	Maize	nucleus, plastid	21.94	25.68
Zm00001d018890_P006	Maize	nucleus, plastid	21.17	25.5
CDY69476	Canola	nucleus	7.28	24.18
PGSC0003DMT400092079	Potato	nucleus	18.3	22.46

Protein Annotations

EnsemblPlants:Zm00001d023706_P002	EnsemblPlants:Zm00001d023706_T002	EnsemblPlantsGene:Zm00001d023706	InterPro:LIM-bd/SEUSS	ncoils:Coil	PANTHER:PTHR10378
PANTHER:PTHR10378:SF17	PFAM:PF01803	ProteinID:AQK39839.1	SEG:seg	UniParc:UPI000843E3A2	UniProt:A0A1D6IUX5
MapMan:35.1	:	:	:	:	:

Description

thioredoxin M1

Coordinates

chr10:+:16400383..16407915

Molecular Weight (calculated)

97572.2 Da

IEP (calculated)

8.849

GRAVY (calculated)

-0.594

Length

907 amino acids

Sequence
(BLAST)

001: MVPSGQHNPM GPGQQVGASL LRTSSSLLGG GAGAGAGGQP GMGMGVGVLP SQSPFSSLVS PRTQYGGVGG GNGLLAGASS VASMLSRQQS YGNGGTGVMP
101: GSGAGLPIGG LQHRGGLDGV GDLVGTGGPD SMAFSSSGPG SLGNQLGVDS LQQQQQLDAP QDSQNQQEHQ QQMSMTYNQQ HMMSQTQQQQ QPAVKLENGG
201: VLGGVKLEQQ MGQPDQSVSA QMLRSSSGGV KLEPQLQALR SLGAIKMEHQ SSDPSVLLQQ QQHMLQLSKQ NPQAAATQLS LLQQQQRFLQ LQQQQQQQQI
301: LKNLPLQRNQ LQQQQQQQQQ QQQQQLLRQQ SLNMRTGKSA AYEPGTCAKR LTHYMYHQQN RPQDNNIEYW RNFVNEYFAP SAKKRWCVSL YGNGRQTTGV
401: FPQDVWHCEI CNRKPGRETT VEVLPRLCQI KYASGTLEEL LYVDMPRESQ NSSGQIVLDY TKAIQESVFE QLRVVREGHL RIVFNQDLKV ICSLVEIASW
501: EFCARRHEEL IPRRSIIPQV SQLGAVVQKY QSSVQSSASL SSQDLQNNCN SFVACARQLA KALEVPLVND LGYTKRYVRC LQIAEVVNCM KDLIDHSRQT
601: GSGPIESLHK FPRRGNSGVS SVQAQQQSEE QKPVPQNSNQ SGQNSAPATG MQVSASGNGD ATSNNSLNFA PSTSAPSSSV VGLLQGSVNC RQDHPTSSGN
701: GLYNGGNSGP VAKANSTNSM QSNAPASFPL PAPSASNGNM MPAPQHSSQM NSPTMSSNLP PMQTPASRPQ EPEPIESQSS VQRILQDLMM QSHINGVGPV
801: GSDMRRANTI TPGMNGVNSL VGNPMTNNPG INGMGFAAMG GLGQQMRTAM GNNALAMNGR TVMNHSAHDL TQLAHQQQQR DLGNQLLGGL RAANSFNNLQ
901: YDWKPAQ

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.