Factsheet for Zm00001d035990_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003830_P001
Zm00001d005351_P001
Zm00001d007842_P002
Zm00001d009837_P001
Zm00001d011571_P001
Zm00001d013559_P001
Zm00001d018742_P001
Zm00001d025333_P001
Zm00001d030350_P001
Zm00001d033404_P002
Zm00001d033859_P002
Zm00001d033861_P001
Zm00001d034212_P001
Zm00001d035266_P001
Zm00001d037596_P001
Zm00001d038994_P001
Zm00001d040789_P001
Zm00001d041791_P001
Zm00001d043902_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	Zm00001d009837_P001	AT2G47700.1	21798944
AT5G62090.1	Zm00001d037596_P001	AT2G47700.1	21798944
AT5G62090.1	Zm00001d040789_P001	AT2G47700.1	21798944
AT5G62090.1	Zm00001d003830_P001	AT3G44720.1	21798944
AT5G62090.1	Zm00001d005351_P001	AT3G44720.1	21798944
AT5G62090.1	Zm00001d025333_P001	AT3G44720.1	21798944
AT5G62090.1	Zm00001d011571_P001	AT3G58630.1	21798944
AT5G62090.1	Zm00001d030350_P001	AT3G58630.1	21798944
AT5G62090.1	Zm00001d038994_P001	AT3G58630.1	21798944
AT5G62090.1	Zm00001d043902_P001	AT3G58630.1	21798944
AT5G62090.1	Zm00001d007842_P002	AT4G08150.1	21798944
AT5G62090.1	Zm00001d013559_P001	AT4G08150.1	21798944
AT5G62090.1	Zm00001d018742_P001	AT4G08150.1	21798944
AT5G62090.1	Zm00001d033404_P002	AT4G08150.1	21798944
AT5G62090.1	Zm00001d033859_P002	AT4G08150.1	21798944
AT5G62090.1	Zm00001d033861_P001	AT4G08150.1	21798944
AT5G62090.1	Zm00001d034212_P001	AT4G08150.1	21798944
AT5G62090.1	Zm00001d035266_P001	AT5G53950.1	21798944
AT5G62090.1	Zm00001d041791_P001	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19170	Sorghum	plastid	83.72	83.61
Zm00001d045516_P006	Maize	nucleus, plastid	79.74	80.26
Os06t0126000-02	Rice	cytosol, nucleus	68.21	64.72
Zm00001d018890_P006	Maize	nucleus, plastid	56.54	58.57
TraesCS7B01G437100.1	Wheat	plastid	60.51	58.49
TraesCS7A01G520700.1	Wheat	nucleus	60.26	58.24
HORVU7Hr1G115870.4	Barley	plastid	57.44	55.65
TraesCS7D01G146100.2	Wheat	nucleus, plastid	58.97	54.63
TraesCS7B01G047100.4	Wheat	plastid	59.36	54.41
TraesCS7D01G510400.2	Wheat	nucleus	60.51	54.32
TraesCS7A01G144600.3	Wheat	nucleus, plastid	58.85	53.68
TraesCS7D01G050000.5	Wheat	nucleus, plastid	58.46	53.21
HORVU7Hr1G029650.10	Barley	plastid	59.49	53.09
TraesCS4A01G441500.1	Wheat	nucleus, plastid	58.72	53.07
HORVU7Hr1G010050.2	Barley	nucleus, plastid	58.97	52.57
TraesCS7A01G054900.2	Wheat	nucleus, plastid	58.59	52.11
GSMUA_Achr7P05870_001	Banana	nucleus	16.79	45.8
KRG88471	Soybean	nucleus, plastid	24.62	44.86
GSMUA_Achr1P16220_001	Banana	nucleus	38.85	43.35
Solyc03g026190.2.1	Tomato	plastid	30.64	42.38
KRH38603	Soybean	plastid	28.21	41.43
GSMUA_Achr1P07930_001	Banana	nucleus	39.74	39.04
KRH38604	Soybean	nucleus	39.36	37.99
GSMUA_Achr10P...	Banana	nucleus	36.79	37.03
CDY57709	Canola	nucleus, plastid	23.08	36.59
KRH09131	Soybean	nucleus, plastid	40.51	36.36
Bra019159.1-P	Field mustard	nucleus, plastid	31.67	36.22
CDY50201	Canola	nucleus, plastid	31.67	36.22
AT4G25515.1	Thale cress	nucleus, plastid	31.79	36.2
CDY52362	Canola	nucleus	31.41	35.61
CDX89417	Canola	nucleus	17.56	35.58
VIT_16s0100g00500.t01	Wine grape	plastid	39.36	35.53
CDX92713	Canola	nucleus, plastid	31.28	35.52
CDY54085	Canola	nucleus, plastid	32.05	35.46
KRH09132	Soybean	plastid	39.62	35.15
CDY30691	Canola	nucleus	34.1	35.09
AT5G62090.1	Thale cress	nucleus	35.13	33.58
VIT_02s0025g04390.t01	Wine grape	vacuole	29.36	33.33
Bra010458.1-P	Field mustard	nucleus, plastid	25.64	33.17
AT4G25520.1	Thale cress	plastid	31.79	33.16
Bra029289.1-P	Field mustard	nucleus	27.56	32.53
CDX92714	Canola	cytosol	22.18	32.52
GSMUA_Achr2P03310_001	Banana	nucleus	33.33	32.22
PGSC0003DMT400037024	Potato	plastid	37.82	32.21
Bra013897.1-P	Field mustard	nucleus	16.41	32.08
Zm00001d023706_P002	Maize	nucleus	25.9	22.27
Zm00001d041803_P001	Maize	nucleus	25.77	21.94
Zm00001d007295_P003	Maize	nucleus, plastid	25.64	21.86
Zm00001d049125_P002	Maize	nucleus, plastid	25.9	21.72

Protein Annotations

EnsemblPlants:Zm00001d035990_P002	EnsemblPlants:Zm00001d035990_T002	EnsemblPlantsGene:Zm00001d035990	EntrezGene:100502315	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378
PANTHER:PTHR10378:SF12	PFAM:PF01803	ProteinID:AQK80080.1	ProteinID:AQK80087.1	ProteinID:AQK80088.1	ProteinID:AQK80090.1
ProteinID:AQK80093.1	ProteinID:AQK80094.1	SEG:seg	UniParc:UPI0002211D9A	UniProt:A0A1D6LK41	MapMan:35.1

Description

Probable transcriptional regulator SLK2

Coordinates

chr6:-:64975900..64984574

Molecular Weight (calculated)

85254.5 Da

IEP (calculated)

9.087

GRAVY (calculated)

-0.566

Length

780 amino acids

Sequence
(BLAST)

001: MNGTHPWTSM SGGACSNLGY ARDMNGNVPI STTNSSGPSI GVSSLVTDAN SSLSGGAQLQ PSTSMNGDSL MRVPASPMSF SSNNISGSSV IDGSIMQQSP
101: PQEQMQKRRS SSVTSQHVID AGGALHAQKK SRTDVSQGDI MQHQLIQHLI HGQNSLHFQG QQNPQLQAFI QQHKLAQLQQ RQQQHLLQPF SQMQQPQVGI
201: PRQPQLRPPL AQTGMQLGGP VRTPIERGVC SRRILQYLFH KRHRPENNSI TYWRKIVEEY FAPRARERWC VSSYENRGNS SAAAPQKALD TWRCGICNTH
301: AGKGYEATYE ILPRLCQIRF DHGVIDEYLY FDSPNEFGLP NGQMVLEHAK VVQKSVYEHL HVIHEGHLRI IFTPELKIIS WEFCSRRHEE YTTRKTIAPQ
401: VNNLLQVVQK YQAVVTESGS AGISNNDAQT ICNMFVTASQ QLAKNLEHHT LNEHGLSKRY VRSLQISEVV NHMKDLIEFS HKNGLGPKES LNSYSKTMAK
501: FQNMHDSRQL MAAANLANNQ SNTKLMGTKE EASASATNQT PGVGAIGNNA LQHATPLNSY QNMLRSSSAN PVLLQQEASS VFKGPTAMHS GIQLEAARSF
601: RGPNQVQFQH PAAIQQQQPM PQQSNFQGFG GVNPQYQHHV LNQLLQEVKN NNHVKAQQLP PDAPKASGGL APGVAIPNVA AAGEQGQHIN SNTRDHNGAV
701: KGAAPAGTGP SNVINNTASM PPGRNNSFKS VSSSPAAATG GIAVNSKVDD SFHQLEDLDL DGLITNELME SGLFGAGQGW

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.