Factsheet for TraesCS4A01G441500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G095100.1
TraesCS1A01G392300.1
TraesCS1B01G123100.1
TraesCS1B01G420500.1
TraesCS1D01G103800.1
TraesCS1D01G400500.1
TraesCS2A01G267400.1
TraesCS2A01G291900.1
TraesCS2A01G292000.1
TraesCS2B01G268200.1
TraesCS2B01G308400.1
TraesCS2B01G308500.1
TraesCS2D01G256400.1
TraesCS2D01G289900.2
TraesCS2D01G290000.1
TraesCS3A01G271400.1
TraesCS3B01G305100.1
TraesCS3D01G271000.1
TraesCS4A01G251800.1
TraesCS4A01G256700.1
TraesCS4A01G291900.1
TraesCS4A01G292000.1
TraesCS4A01G292100.1
TraesCS4A01G292200.1
TraesCS4B01G021900.2
TraesCS4B01G022000.1
TraesCS4B01G057900.1
TraesCS4D01G019600.1
TraesCS4D01G019800.1
TraesCS4D01G019900.1
TraesCS4D01G058000.1
TraesCS5A01G370200.1
TraesCS5A01G405900.1
TraesCS5B01G372500.1
TraesCS5B01G410600.1
TraesCS5D01G379700.1
TraesCS5D01G415900.1
TraesCS7A01G334800.1
TraesCS7B01G246300.1
TraesCS7D01G342300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	TraesCS1A01G095100.1	AT2G47700.1	21798944
AT5G62090.1	TraesCS1B01G123100.1	AT2G47700.1	21798944
AT5G62090.1	TraesCS1D01G103800.1	AT2G47700.1	21798944
AT5G62090.1	TraesCS2A01G291900.1	AT3G44720.1	21798944
AT5G62090.1	TraesCS2A01G292000.1	AT3G44720.1	21798944
AT5G62090.1	TraesCS2B01G308400.1	AT3G44720.1	21798944
AT5G62090.1	TraesCS2B01G308500.1	AT3G44720.1	21798944
AT5G62090.1	TraesCS2D01G289900.2	AT3G44720.1	21798944
AT5G62090.1	TraesCS2D01G290000.1	AT3G44720.1	21798944
AT5G62090.1	TraesCS5A01G370200.1	AT3G44720.1	21798944
AT5G62090.1	TraesCS5B01G372500.1	AT3G44720.1	21798944
AT5G62090.1	TraesCS5D01G379700.1	AT3G44720.1	21798944
AT5G62090.1	TraesCS1A01G392300.1	AT3G58630.1	21798944
AT5G62090.1	TraesCS1B01G420500.1	AT3G58630.1	21798944
AT5G62090.1	TraesCS1D01G400500.1	AT3G58630.1	21798944
AT5G62090.1	TraesCS3A01G271400.1	AT3G58630.1	21798944
AT5G62090.1	TraesCS3B01G305100.1	AT3G58630.1	21798944
AT5G62090.1	TraesCS3D01G271000.1	AT3G58630.1	21798944
AT5G62090.1	TraesCS2A01G267400.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS2B01G268200.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS2D01G256400.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS4A01G251800.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS4A01G256700.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS4A01G291900.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS4A01G292000.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS4A01G292100.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS4A01G292200.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS4B01G021900.2	AT4G08150.1	21798944
AT5G62090.1	TraesCS4B01G022000.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS4B01G057900.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS4D01G019600.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS4D01G019800.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS4D01G019900.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS4D01G058000.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS5A01G405900.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS5B01G410600.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS5D01G415900.1	AT4G08150.1	21798944
AT5G62090.1	TraesCS7A01G334800.1	AT5G53950.1	21798944
AT5G62090.1	TraesCS7B01G246300.1	AT5G53950.1	21798944
AT5G62090.1	TraesCS7D01G342300.1	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G050000.5	Wheat	nucleus, plastid	95.83	96.5
TraesCS7A01G144600.3	Wheat	nucleus, plastid	94.79	95.67
TraesCS7A01G054900.2	Wheat	nucleus, plastid	95.36	93.84
TraesCS7B01G047100.4	Wheat	plastid	88.76	90.01
HORVU7Hr1G029650.10	Barley	plastid	90.96	89.82
HORVU7Hr1G010050.2	Barley	nucleus, plastid	90.5	89.26
TraesCS7A01G520700.1	Wheat	nucleus	70.22	75.09
Os06t0126000-02	Rice	cytosol, nucleus	62.69	65.82
KXG19170	Sorghum	plastid	54.69	60.44
KXG34470	Sorghum	nucleus, plastid	51.1	59.76
Zm00001d045516_P006	Maize	nucleus, plastid	52.95	58.97
Zm00001d035990_P002	Maize	plastid	53.07	58.72
Zm00001d018890_P006	Maize	nucleus, plastid	47.62	54.58
GSMUA_Achr7P05870_001	Banana	nucleus	15.3	46.15
Solyc03g026190.2.1	Tomato	plastid	27.81	42.55
GSMUA_Achr1P16220_001	Banana	nucleus	33.14	40.92
KRG88471	Soybean	nucleus, plastid	20.16	40.65
KRH38603	Soybean	plastid	24.45	39.74
GSMUA_Achr1P07930_001	Banana	nucleus	35.23	38.29
KRH38604	Soybean	nucleus	34.53	36.88
GSMUA_Achr10P...	Banana	nucleus	32.68	36.39
CDX92713	Canola	nucleus, plastid	28.62	35.95
CDY57709	Canola	nucleus, plastid	20.28	35.57
CDX89417	Canola	nucleus	15.64	35.06
CDY50201	Canola	nucleus, plastid	27.35	34.6
Bra019159.1-P	Field mustard	nucleus, plastid	27.35	34.6
VIT_16s0100g00500.t01	Wine grape	plastid	34.53	34.49
AT4G25515.1	Thale cress	nucleus, plastid	27.35	34.45
CDY52362	Canola	nucleus	27.46	34.45
CDY54085	Canola	nucleus, plastid	28.04	34.33
KRH09132	Soybean	plastid	34.41	33.79
KRH09131	Soybean	nucleus, plastid	33.95	33.72
CDY30691	Canola	nucleus	29.55	33.64
GSMUA_Achr2P03310_001	Banana	nucleus	30.82	32.96
AT4G25520.1	Thale cress	plastid	28.51	32.89
Bra010458.1-P	Field mustard	nucleus, plastid	22.94	32.84
VIT_02s0025g04390.t01	Wine grape	vacuole	25.84	32.46
AT5G62090.1	Thale cress	nucleus	30.01	31.74
PGSC0003DMT400037024	Potato	plastid	33.6	31.66
CDX92714	Canola	cytosol	19.47	31.58
Bra013897.1-P	Field mustard	nucleus	14.37	31.08
Bra029289.1-P	Field mustard	nucleus	22.48	29.35
TraesCS4A01G211800.1	Wheat	nucleus, plastid	22.48	21.32
TraesCS4A01G211700.2	Wheat	nucleus, plastid	22.48	20.79

Protein Annotations

EnsemblPlants:TraesCS4A01G441500.1	EnsemblPlantsGene:TraesCS4A01G441500	InterPro:LIM-bd/SEUSS	ncoils:Coil	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12
PFAM:PF01803	SEG:seg	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4A:-:709900905..709909255

Molecular Weight (calculated)

95683.9 Da

IEP (calculated)

9.086

GRAVY (calculated)

-0.792

Length

863 amino acids

Sequence
(BLAST)

001: MSGAPRSNLG LVPRDMNGSL PVSTTNSSGP SIGVSSLVTD GNSSLSGGAQ FQQSTSMNAD SFMRLPASPM SFSSNNISGS SVIDGSIMQQ SPPQEQMQKR
101: RASSVTSQPV IDAAAAFHAQ KKPRVDIRQD DILQQQLIQQ LLQGQSSLHL QGQHNPQLQA LIRQHKLAQI QQQQQHQLSQ QFPQHQHSQV GIPRQPQLRP
201: PLAQPGIQLA GPVRTPVESG LCSRRLMQYL YHKRYRPDNN PITYWRKLID EYFAPRSRER WCVSSYEKPG NTSAAIPQTS PGTWRCDICN THSGKGYEAT
301: SEILPRLCQI RFDHGVKDEY LFLDMPNEFR LPNGLLLLEH TKVVQKSIYD HQHVTHEGQL RIIFTPELKI MSWEFCSQKH DEYVTRKFLT EQVTHMLRAT
401: QSYQATVTKN GPAGLSHDEA QKACNDFASA SRQLAKNIDH HSLNEHGLSK RYVRCLQISE VVNHMKDLIE FSHKNKLGPI EGLKNYPKQT AGPKLTVQNL
501: HDSKAVKIEM SPHVNNEVPG VGATSNNPQN PAAQSNYQHI LRSSSANQGL LQQEASQNAA AMNSYQNLFR SSSANQGLLQ QEASQNAAAL NNYQNMLRGS
601: SPNQSLLQQE ASSIFKGPTA VHSGIQLEAS RSFRAAQLGQ FQHPMSFQQG MPQHQHNNFQ GLGASPQFQQ HVINQLLQEA KNTNSRTLAH QQQQQHHQQQ
701: QQQQQHHQLQ QQQQHHQQQQ QQHQQQQQQQ HQHQQQQHQQ QQQSPSTPNA NGGLASGAAV TNSAASTEQA QHMNNGTAKG AAPMGMTGPS NLINSGAGMV
801: QRSSSFKSVS SNPAASGGNA VATPKAESVH DMDDLEHLIS HELVESGLFM GEQPGDGGFS WNI

Best Arabidopsis Sequence Match ( AT4G25520.1 )
(BLAST)

001: MNRTVVSGAV ESSFSLTDAV GTEALNMQRS SGINNNMRIP TSPMSFSSNS VNIPGSLVLD GSAASMQHLP QQQQQQLLQQ QTGQGSVPMR ENNYSHVDKK
101: PRLEVKQEDM LQQQILQQLI QRQDPTGRNP QMQALLQQQR LRQHQQMLQS MSPSQRLQLQ QQQQLRQQLQ QQGTQQIPPN VRPYEVGVCA RKLMMYLYHL
201: QQRPAENCIT YWRKFVAEYF SPRAKQRLCL SQYESAGHHA LGMFPQAAPD MWQCDLCGTK SGKGFEATFD VLARLIEIKF ASGIIDELLY LDHPRENRFP
301: NGLMMLEYRK AVQETVHEQF RVVREGHLRI IFSQDLKILS WEFCARRHEE LLLRRLIAPQ VNQLLQVAQK CQSTISESGS EGVSQQDLQS NSNMVLGAGR
401: QLAKFMELQS LNDLGYPKRY IRTLQISEVV KSMKDLMNFT GEQKIGPIEG LKRLLEQTVT VKLQKQKMQE MEQFGNNGAI NGPVQAQMVL TSGTMNGSTG
501: NNTNNHHQIV GRGAMSGPAE GQMVISSGTV SGATANNNSN NHNQIVGRGA MNGSAQAAAA LTNYQSMLMR QNAMNNPNSN TGKQEGFSSQ NPTPNSNQSP
601: SSSSQQRHNL VTGGFPNSPQ MQQQQRTMNG PTNILPQNHP HQLQSPHSHG NTPEQQMLHQ LLQEMSENGG SVQQQQAFSG QSGSNSNAER NTTASTSNIS
701: GGGRAPSRNN SFKAASNNNL HFSEDISITD HDFSEDGFFN NNDIYGGL

Arabidopsis Description

SLK1Probable transcriptional regulator SLK1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVM7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.