CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22042
KRH22283
KRH22725
KRH25168
KRH26232
KRH26581
KRH27047
KRH27280
KRH30513
KRH55187
KRH61471

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	KRH22725	AT3G44720.1	21798944
AT5G62090.1	KRH25168	AT3G44720.1	21798944
AT5G62090.1	KRH26581	AT3G44720.1	21798944
AT5G62090.1	KRH30513	AT3G44720.1	21798944
AT5G62090.1	KRH22283	AT3G58630.1	21798944
AT5G62090.1	KRH27047	AT3G58630.1	21798944
AT5G62090.1	KRH61471	AT4G08150.1	21798944
AT5G62090.1	KRH22042	AT5G53950.1	21798944
AT5G62090.1	KRH26232	AT5G53950.1	21798944
AT5G62090.1	KRH27280	AT5G53950.1	21798944
AT5G62090.1	KRH55187	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38603	Soybean	plastid	79.91	64.41
Solyc03g026190.2.1	Tomato	plastid	74.07	56.21
KRH38604	Soybean	nucleus	84.58	44.8
KRH09131	Soybean	nucleus, plastid	89.25	43.96
KRH09132	Soybean	plastid	85.28	41.52
VIT_16s0100g00500.t01	Wine grape	plastid	77.1	38.19
GSMUA_Achr7P05870_001	Banana	nucleus	25.47	38.11
CDY57709	Canola	nucleus, plastid	40.19	34.96
CDX89417	Canola	nucleus	31.07	34.55
PGSC0003DMT400037024	Potato	plastid	72.43	33.84
AT5G62090.1	Thale cress	nucleus	63.08	33.09
GSMUA_Achr1P16220_001	Banana	nucleus	53.97	33.05
CDY30691	Canola	nucleus	58.41	32.98
AT4G25515.1	Thale cress	nucleus, plastid	51.87	32.41
CDY54085	Canola	nucleus, plastid	53.04	32.2
CDY50201	Canola	nucleus, plastid	51.17	32.11
Bra019159.1-P	Field mustard	nucleus, plastid	51.17	32.11
CDX92713	Canola	nucleus, plastid	51.17	31.88
CDY52362	Canola	nucleus	51.17	31.83
CDX92714	Canola	cytosol	39.25	31.58
Bra029289.1-P	Field mustard	nucleus	47.66	30.86
GSMUA_Achr10P...	Banana	nucleus	53.74	29.68
GSMUA_Achr1P07930_001	Banana	nucleus	54.91	29.6
AT4G25520.1	Thale cress	plastid	50.7	29.01
Bra010458.1-P	Field mustard	nucleus, plastid	39.72	28.19
Bra013897.1-P	Field mustard	nucleus	26.17	28.07
GSMUA_Achr2P03310_001	Banana	nucleus	48.83	25.9
KXG19170	Sorghum	plastid	46.5	25.48
Zm00001d045516_P006	Maize	nucleus, plastid	45.33	25.03
Zm00001d035990_P002	Maize	plastid	44.86	24.62
TraesCS7B01G437100.1	Wheat	plastid	45.09	23.92
TraesCS7A01G520700.1	Wheat	nucleus	44.86	23.79
HORVU7Hr1G115870.4	Barley	plastid	44.63	23.73
KXG34470	Sorghum	nucleus, plastid	40.65	23.58
Os06t0126000-02	Rice	cytosol, nucleus	44.16	22.99
Zm00001d018890_P006	Maize	nucleus, plastid	40.19	22.84
TraesCS7D01G510400.2	Wheat	nucleus	44.86	22.09
TraesCS7D01G146100.2	Wheat	nucleus, plastid	41.36	21.02
TraesCS7A01G144600.3	Wheat	nucleus, plastid	41.59	20.82
TraesCS7B01G047100.4	Wheat	plastid	41.12	20.68
HORVU7Hr1G029650.10	Barley	plastid	41.59	20.37
TraesCS7D01G050000.5	Wheat	nucleus, plastid	40.65	20.3
HORVU7Hr1G010050.2	Barley	nucleus, plastid	41.36	20.23
TraesCS4A01G441500.1	Wheat	nucleus, plastid	40.65	20.16
TraesCS7A01G054900.2	Wheat	nucleus, plastid	40.65	19.84
KRH64564	Soybean	nucleus, plastid	39.02	18.33
KRH18102	Soybean	plastid	39.25	18.1
KRH15928	Soybean	nucleus, plastid	37.38	17.49
KRH53367	Soybean	nucleus	38.78	17.27

Protein Annotations

EnsemblPlants:KRG88471	EnsemblPlantsGene:GLYMA_U036900	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803
ProteinID:KRG88471	ProteinID:KRG88471.1	SEG:seg	UniParc:UPI0002949172	UniProt:K7LDZ4	MapMan:35.1

Description

hypothetical protein

Coordinates

chrscaffold_376:-:1899..6013

Molecular Weight (calculated)

47692.9 Da

IEP (calculated)

8.787

GRAVY (calculated)

-0.432

Length

428 amino acids

Sequence
(BLAST)

001: VNSHLSSSFV NSSSTVPGAG CSNLGPVSGD INNAVLNTVA NSAPSVGASS LVTDANSALS GGPHLQRSAM MDGSSVVQQS SHQDQNVQQL QQNQQQLQGA
101: SSATSLPASQ TGPSLLQMGA QVPRSFILDP NNMSHLSKKP RMDIKQEDIM QQQVIQQILQ RQDPMQFQGR NPQLQAFLQQ QQRLRQQQIF QSMPQLQRAH
201: LQQQQQQRPN DNSIAYWRKF VAEYYSPRAK KRWCLSLYSN VGHHALGVFP QAAMDAWQCD ICGSKSGRGF EATYEVLPRL NEIKLGSGVI DELLFLDLPR
301: ETRFPSGAMM LEYAKAVQES VYEPLRVVRE GQLRIIFTQD LKFCARRHEE LLPRRLVAPQ VNQLIQVAQK CQSTIAESGA DWVSQQDLQT NSNMVLTAGR
401: QLAKILELQS LNDLGFSKRY VRCLQVCC

Best Arabidopsis Sequence Match ( AT4G25515.1 )
(BLAST)

001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL

Arabidopsis Description

SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.