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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 4
  • cytosol 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, nucleus, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d003830_P001
Zm00001d005351_P001
Zm00001d007842_P002
Zm00001d009837_P001
Zm00001d011571_P001
Zm00001d013559_P001
Zm00001d018742_P001
Zm00001d025333_P001
Zm00001d030350_P001
Zm00001d033404_P002
Zm00001d033859_P002
Zm00001d033861_P001
Zm00001d034212_P001
Zm00001d035266_P001
Zm00001d037596_P001
Zm00001d038994_P001
Zm00001d040789_P001
Zm00001d041791_P001
Zm00001d043902_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G62090.1 Zm00001d009837_P001 AT2G47700.1 21798944
AT5G62090.1 Zm00001d037596_P001 AT2G47700.1 21798944
AT5G62090.1 Zm00001d040789_P001 AT2G47700.1 21798944
AT5G62090.1 Zm00001d003830_P001 AT3G44720.1 21798944
AT5G62090.1 Zm00001d005351_P001 AT3G44720.1 21798944
AT5G62090.1 Zm00001d025333_P001 AT3G44720.1 21798944
AT5G62090.1 Zm00001d011571_P001 AT3G58630.1 21798944
AT5G62090.1 Zm00001d030350_P001 AT3G58630.1 21798944
AT5G62090.1 Zm00001d038994_P001 AT3G58630.1 21798944
AT5G62090.1 Zm00001d043902_P001 AT3G58630.1 21798944
AT5G62090.1 Zm00001d007842_P002 AT4G08150.1 21798944
AT5G62090.1 Zm00001d013559_P001 AT4G08150.1 21798944
AT5G62090.1 Zm00001d018742_P001 AT4G08150.1 21798944
AT5G62090.1 Zm00001d033404_P002 AT4G08150.1 21798944
AT5G62090.1 Zm00001d033859_P002 AT4G08150.1 21798944
AT5G62090.1 Zm00001d033861_P001 AT4G08150.1 21798944
AT5G62090.1 Zm00001d034212_P001 AT4G08150.1 21798944
AT5G62090.1 Zm00001d035266_P001 AT5G53950.1 21798944
AT5G62090.1 Zm00001d041791_P001 AT5G53950.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG34470 Sorghum nucleus, plastid 70.78 72.22
Os06t0126000-02 Rice cytosol, nucleus 63.35 58.03
Zm00001d045516_P006 Maize nucleus, plastid 58.83 57.16
Zm00001d035990_P002 Maize plastid 58.57 56.54
TraesCS7A01G520700.1 Wheat nucleus 56.57 52.79
TraesCS7B01G437100.1 Wheat plastid 56.44 52.66
HORVU7Hr1G115870.4 Barley plastid 53.65 50.19
TraesCS7D01G510400.2 Wheat nucleus 56.97 49.37
TraesCS7D01G146100.2 Wheat nucleus, plastid 54.71 48.93
TraesCS7B01G047100.4 Wheat plastid 54.98 48.65
TraesCS7A01G144600.3 Wheat nucleus, plastid 54.71 48.19
TraesCS7D01G050000.5 Wheat nucleus, plastid 54.45 47.84
TraesCS4A01G441500.1 Wheat nucleus, plastid 54.58 47.62
HORVU7Hr1G010050.2 Barley nucleus, plastid 55.11 47.43
TraesCS7A01G054900.2 Wheat nucleus, plastid 54.71 46.98
HORVU7Hr1G029650.10 Barley plastid 54.32 46.8
KRG88471 Soybean nucleus, plastid 22.84 40.19
Solyc03g026190.2.1 Tomato plastid 29.88 39.89
GSMUA_Achr1P16220_001 Banana nucleus 36.79 39.63
GSMUA_Achr7P05870_001 Banana nucleus 14.48 38.11
CDY52362 Canola nucleus 33.47 36.63
KRH38603 Soybean plastid 25.76 36.53
CDY57709 Canola nucleus, plastid 23.77 36.38
GSMUA_Achr1P07930_001 Banana nucleus 38.25 36.27
CDX89417 Canola nucleus 18.19 35.58
AT4G25515.1 Thale cress nucleus, plastid 32.27 35.47
CDY54085 Canola nucleus, plastid 33.2 35.46
CDX92713 Canola nucleus, plastid 32.01 35.08
CDY50201 Canola nucleus, plastid 31.21 34.46
Bra019159.1-P Field mustard nucleus, plastid 31.21 34.46
CDX92714 Canola cytosol 24.3 34.4
GSMUA_Achr10P... Banana nucleus 35.33 34.32
Bra010458.1-P Field mustard nucleus, plastid 27.09 33.83
KRH38604 Soybean nucleus 35.99 33.54
CDY30691 Canola nucleus 33.2 32.98
VIT_16s0100g00500.t01 Wine grape plastid 37.72 32.87
Bra013897.1-P Field mustard nucleus 17.26 32.58
KRH09131 Soybean nucleus, plastid 37.58 32.57
AT4G25520.1 Thale cress plastid 32.14 32.35
VIT_02s0025g04390.t01 Wine grape vacuole 29.48 32.31
AT5G62090.1 Thale cress nucleus 34.13 31.5
PGSC0003DMT400037024 Potato plastid 38.11 31.33
KRH09132 Soybean plastid 36.39 31.17
GSMUA_Achr2P03310_001 Banana nucleus 32.27 30.11
Bra029289.1-P Field mustard nucleus 26.29 29.95
Zm00001d007295_P003 Maize nucleus, plastid 26.03 21.42
Zm00001d023706_P002 Maize nucleus 25.5 21.17
Zm00001d049125_P002 Maize nucleus, plastid 25.9 20.97
Zm00001d041803_P001 Maize nucleus 25.23 20.74
Protein Annotations
EnsemblPlants:Zm00001d018890_P006EnsemblPlants:Zm00001d018890_T006EnsemblPlantsGene:Zm00001d018890EntrezGene:100383356InterPro:LIM-bd/SEUSSPANTHER:PTHR10378
PANTHER:PTHR10378:SF12PFAM:PF01803ProteinID:ONM51560.1SEG:segUniParc:UPI00084543A2UniProt:A0A1D6HT45
MapMan:35.1:::::
Description
Probable transcriptional regulator SLK2
Coordinates
chr7:+:8471864..8478339
Molecular Weight (calculated)
82723.5 Da
IEP (calculated)
9.511
GRAVY (calculated)
-0.593
Length
753 amino acids
Sequence
(BLAST)
001: MIDANSSFSG GAQLQPSTSM NTYSFMPAPS SPISFSSNNI SGSSVIDGSI VQQSPPQDQA QKQRSSSLTS HPIIEAGGAL HAPKKLRIDV RQDELQQQLI
101: QRLLHGQGSL HLQGQQNPQL QALIQQHNLA HMQQRQQQLL QSFAQTQPSQ IGIPHQPQLP PSLAQPGIAV PVRTPVNNGL CSRRLMQYLY HKRRRPENNP
201: ITYWRKLVEE YFAPTARERW CVSSYEKRAN ASVSTAQTAQ DVWRCDICKT HGAKGYESTY EVLPRLCQIR FDHGVIDEYL FLDMTKPNEF QLPNGLMVLE
301: HTKVVQKSVY EHLHVIHEGH LRIIFTPELK KWSQARVDKS SYLPLTQIMS WEFCSRRHEE YITRRVLAPK VNNLLQVAQK FQTAATENGP AGVSNNDAQT
401: ICNMFVAASR QLAKNLEHHT LNEHGLSKRY VRCLQISEVV NNMKDLIEFT NRNNFGPIEG LKNYPKPNVS ELPGQNPRET KQTTAAGGLP NDQNNTEAMG
501: TKQETSARVD NGASVAGAVG NSAPQNAAAL NGYQNLPRSS SANQSQLQQG ASGAFKGPAA TRNGMQMEAS RSFCGPNQVQ LARFQHPGSF QHPMPQHNNL
601: QGLGLQNNHR GLGVSPQYQQ HALNQLIQEV KNAKRHTLPQ QPPLDIPNIS SGITSGGANT NSAGTGDQGQ RMAVNGAATI YTGPTSVINN STARSNNFKS
701: VSSNLAVAAA PAGGNAATLK AKPFHEFDDL EHLIANELVG SGLLNGNELA WNS
Best Arabidopsis Sequence Match ( AT4G25515.1 )
(BLAST)
001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
Arabidopsis Description
SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.