Factsheet for Os06t0126000-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0350900-02
Os01t0674000-01
Os03t0673000-00
Os03t0673500-00
Os03t0727000-02
Os03t0727200-00
Os03t0771500-01
Os03t0772100-00
Os04t0406600-01
Os05t0154600-01
Os05t0560600-01
Os06t0344900-00
Os07t0129700-01
Os09t0565700-01
Os09t0566050-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	Os01t0350900-02	AT2G47700.1	21798944
AT5G62090.1	Os05t0154600-01	AT2G47700.1	21798944
AT5G62090.1	Os04t0406600-01	AT3G44720.1	21798944
AT5G62090.1	Os09t0565700-01	AT3G44720.1	21798944
AT5G62090.1	Os09t0566050-00	AT3G44720.1	21798944
AT5G62090.1	Os01t0674000-01	AT3G58630.1	21798944
AT5G62090.1	Os05t0560600-01	AT3G58630.1	21798944
AT5G62090.1	Os03t0673000-00	AT4G08150.1	21798944
AT5G62090.1	Os03t0673500-00	AT4G08150.1	21798944
AT5G62090.1	Os03t0727000-02	AT4G08150.1	21798944
AT5G62090.1	Os03t0727200-00	AT4G08150.1	21798944
AT5G62090.1	Os03t0771500-01	AT4G08150.1	21798944
AT5G62090.1	Os03t0772100-00	AT4G08150.1	21798944
AT5G62090.1	Os07t0129700-01	AT4G08150.1	21798944
AT5G62090.1	Os06t0344900-00	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19170	Sorghum	plastid	65.94	69.4
KXG34470	Sorghum	nucleus, plastid	62.17	69.24
Zm00001d035990_P002	Maize	plastid	64.72	68.21
TraesCS7B01G437100.1	Wheat	plastid	66.79	68.03
TraesCS7A01G520700.1	Wheat	nucleus	66.67	67.91
Zm00001d045516_P006	Maize	nucleus, plastid	62.04	65.81
HORVU7Hr1G115870.4	Barley	plastid	63.99	65.34
TraesCS7D01G146100.2	Wheat	nucleus, plastid	65.94	64.37
TraesCS7D01G510400.2	Wheat	nucleus	67.15	63.52
TraesCS7A01G144600.3	Wheat	nucleus, plastid	65.94	63.39
Zm00001d018890_P006	Maize	nucleus, plastid	58.03	63.35
TraesCS7B01G047100.4	Wheat	plastid	65.33	63.1
TraesCS7D01G050000.5	Wheat	nucleus, plastid	65.69	63.01
TraesCS4A01G441500.1	Wheat	nucleus, plastid	65.82	62.69
HORVU7Hr1G010050.2	Barley	nucleus, plastid	66.06	62.06
TraesCS7A01G054900.2	Wheat	nucleus, plastid	66.18	62.03
HORVU7Hr1G029650.10	Barley	plastid	65.45	61.56
GSMUA_Achr7P05870_001	Banana	nucleus	16.3	46.85
Solyc03g026190.2.1	Tomato	plastid	30.41	44.33
KRG88471	Soybean	nucleus, plastid	22.99	44.16
GSMUA_Achr1P16220_001	Banana	nucleus	36.74	43.2
KRH38603	Soybean	plastid	27.25	42.18
GSMUA_Achr1P07930_001	Banana	nucleus	40.15	41.56
GSMUA_Achr10P...	Banana	nucleus	37.35	39.61
KRH38604	Soybean	nucleus	38.69	39.36
AT4G25515.1	Thale cress	nucleus, plastid	31.39	37.66
CDY57709	Canola	nucleus, plastid	22.51	37.6
CDX92713	Canola	nucleus, plastid	31.39	37.55
VIT_16s0100g00500.t01	Wine grape	plastid	39.42	37.5
CDX89417	Canola	nucleus	17.52	37.4
KRH09131	Soybean	nucleus, plastid	39.42	37.28
Bra019159.1-P	Field mustard	nucleus, plastid	30.9	37.24
CDY50201	Canola	nucleus, plastid	30.9	37.24
CDY30691	Canola	nucleus	34.31	37.2
CDY54085	Canola	nucleus, plastid	31.87	37.16
CDY52362	Canola	nucleus	31.02	37.06
KRH09132	Soybean	plastid	38.44	35.95
AT5G62090.1	Thale cress	nucleus	35.64	35.91
AT4G25520.1	Thale cress	plastid	32.6	35.83
Bra010458.1-P	Field mustard	nucleus, plastid	25.79	35.16
CDX92714	Canola	cytosol	22.38	34.59
Bra013897.1-P	Field mustard	nucleus	16.79	34.59
PGSC0003DMT400037024	Potato	plastid	38.44	34.5
Bra029289.1-P	Field mustard	nucleus	27.49	34.19
GSMUA_Achr2P03310_001	Banana	nucleus	33.45	34.08
VIT_02s0025g04390.t01	Wine grape	vacuole	27.98	33.48
Os11t0207000-01	Rice	nucleus, plastid	23.6	21.23
Os11t0207100-01	Rice	nucleus	23.6	20.79

Protein Annotations

EnsemblPlants:Os06t0126000-02	EnsemblPlantsGene:Os06g0126000	InterPro:LIM-bd/SEUSS	ncoils:Coil	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12
PFAM:PF01803	ProteinID:BAS95921.1	ProteinID:BAS95922.1	ProteinID:BAS95923.1	SEG:seg	UniParc:UPI000393B927
UniProt:A0A0N7KLG1	MapMan:35.1	:	:	:	:

Description

LIM binding protein domain containing protein. (Os06t0126000-01);Hypothetical conserved gene. (Os06t0126000-02);Hypothetical conserved gene. (Os06t0126000-04);Hypothetical conserved gene. (Os06t0126000-05)

Coordinates

chr6:-:1389403..1395801

Molecular Weight (calculated)

89892.4 Da

IEP (calculated)

8.479

GRAVY (calculated)

-0.530

Length

822 amino acids

Sequence
(BLAST)

001: ADELKVLQSD DWDRTLVTSM SGAPCSNLGL VPRDMHGSIP ISTTNSSGPS IGVSSLVTDA NSSLSGGAQL QPSTSMNADS FMRLPASPMS FSSNNISGSS
101: VIDGPIVQQS PPQEQMQKRR SSSVTSQPVI DAAGALHAQK KSRVDIRQDD ILQHNLIQQL LQGQSSLHLQ GQQNPQIQAL IHQHKLAQIQ QQQQHQMLQP
201: FSQIQQSQVG IPRQPQLRPP LAQPGMQLAG PVRTPVENGL CSRRLKQYLY HKRHRPENNP ITYWRKLIDE YFAPRARERW CVSSYEKRGN PSGAVPHTAP
301: DSWRCDICNT HGGKGYEATY EILPRLCQIR FDHGVIDEYL FLDMANEFRL PNGLMLLEHT KVVQKSIYEH MHVIHEGQLR IIFTPELKIM SWEFCSRRHD
401: EYITRRFLSP QVAHLLQVAQ KYQTVATESG PAGVSNSDAQ NICNMFVTAS RQLAKNIDHH TLNEHGLSKR YVRCLQISEV VNHMKDLIEF SHKNKLGPIE
501: GLKSYPKQTA AKLPVQNMHE PKQLMAAAGL PNDQTNLKAM GVKTEMNTHA NETHGIGPIG NGPQNAAALN NYQNPIGNGL QNAAALNNYQ NILRSSVANQ
601: SLLQQEASSM FKGPTAMHNG IQLEASRSFR GPNQVHLAQF QHPASFQQPM PQQSSLQGLG VSPQYQQHVL HQLLQEAKNT NNRVLAQQQQ QQQLQHAPAN
701: SGLASGGTAI TGSAASGDHM NNNGAVKGGT PMVTTGPSSV INNTASILPS RSNSFKSVSS NPQVAAAAGG GIGSGGHAAT PKADALHELD DLDNLGNLIS
801: TELEESGLFL GDQAGGGYSW NM

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.