Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G146100.2 | Wheat | nucleus, plastid | 92.36 | 93.35 |
| TraesCS7A01G144600.3 | Wheat | nucleus, plastid | 92.6 | 92.16 |
| TraesCS7D01G050000.5 | Wheat | nucleus, plastid | 89.42 | 88.8 |
| TraesCS4A01G441500.1 | Wheat | nucleus, plastid | 90.01 | 88.76 |
| TraesCS7A01G054900.2 | Wheat | nucleus, plastid | 90.48 | 87.8 |
| HORVU7Hr1G010050.2 | Barley | nucleus, plastid | 90.13 | 87.66 |
| HORVU7Hr1G029650.10 | Barley | plastid | 89.31 | 86.96 |
| TraesCS7B01G437100.1 | Wheat | plastid | 70.15 | 73.98 |
| Os06t0126000-02 | Rice | cytosol, nucleus | 63.1 | 65.33 |
| KXG34470 | Sorghum | nucleus, plastid | 52.76 | 60.84 |
| KXG19170 | Sorghum | plastid | 55.58 | 60.56 |
| Zm00001d035990_P002 | Maize | plastid | 54.41 | 59.36 |
| Zm00001d045516_P006 | Maize | nucleus, plastid | 53.11 | 58.32 |
| Zm00001d018890_P006 | Maize | nucleus, plastid | 48.65 | 54.98 |
| GSMUA_Achr7P05870_001 | Banana | nucleus | 15.51 | 46.15 |
| Solyc03g026190.2.1 | Tomato | plastid | 28.32 | 42.73 |
| GSMUA_Achr1P16220_001 | Banana | nucleus | 34.55 | 42.06 |
| KRG88471 | Soybean | nucleus, plastid | 20.68 | 41.12 |
| KRH38603 | Soybean | plastid | 25.03 | 40.11 |
| GSMUA_Achr1P07930_001 | Banana | nucleus | 35.96 | 38.54 |
| GSMUA_Achr10P... | Banana | nucleus | 33.61 | 36.9 |
| KRH38604 | Soybean | nucleus | 34.78 | 36.63 |
| CDX92713 | Canola | nucleus, plastid | 28.91 | 35.81 |
| CDY57709 | Canola | nucleus, plastid | 20.56 | 35.57 |
| CDX89417 | Canola | nucleus | 15.86 | 35.06 |
| CDY50201 | Canola | nucleus, plastid | 27.61 | 34.46 |
| Bra019159.1-P | Field mustard | nucleus, plastid | 27.61 | 34.46 |
| VIT_16s0100g00500.t01 | Wine grape | plastid | 34.9 | 34.38 |
| AT4G25515.1 | Thale cress | nucleus, plastid | 27.61 | 34.31 |
| KRH09131 | Soybean | nucleus, plastid | 34.78 | 34.06 |
| CDY54085 | Canola | nucleus, plastid | 28.2 | 34.04 |
| CDY52362 | Canola | nucleus | 27.5 | 34.01 |
| KRH09132 | Soybean | plastid | 35.02 | 33.9 |
| CDY30691 | Canola | nucleus | 29.96 | 33.64 |
| VIT_02s0025g04390.t01 | Wine grape | vacuole | 27.03 | 33.48 |
| AT4G25520.1 | Thale cress | plastid | 28.91 | 32.89 |
| GSMUA_Achr2P03310_001 | Banana | nucleus | 30.9 | 32.59 |
| CDX92714 | Canola | cytosol | 20.33 | 32.52 |
| PGSC0003DMT400037024 | Potato | plastid | 34.78 | 32.31 |
| AT5G62090.1 | Thale cress | nucleus | 30.9 | 32.23 |
| Bra010458.1-P | Field mustard | nucleus, plastid | 22.8 | 32.17 |
| Bra013897.1-P | Field mustard | nucleus | 14.57 | 31.08 |
| Bra029289.1-P | Field mustard | nucleus | 22.91 | 29.5 |
| TraesCS4B01G104300.1 | Wheat | nucleus, plastid | 22.68 | 21.16 |
| TraesCS4B01G104400.2 | Wheat | nucleus, plastid | 23.15 | 21.09 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G047100.4 | EnsemblPlantsGene:TraesCS7B01G047100 | InterPro:LIM-bd/SEUSS | ncoils:Coil | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF12 |
| PFAM:PF01803 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7B:+:46346332..46351491
Molecular Weight (calculated)
94136.7 Da
IEP (calculated)
9.555
GRAVY (calculated)
-0.696
Length
851 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAPRSNLG LVPRDMNGSL PVSTTNSSGP SIGVSSLVTD GNSSLSGGAQ FQQSTSMNAD SFMRLPASPM SFSSNNISGS SVIDGSIMQQ SPPQEQMQKR
101: RASSVTSQPV IDAAAAFHAQ KKPRVDIRQD DILQQQLIQQ LLQGQSSLHL QGQHNPQLQA LIRQHKLAQI QQQQQHQLSQ QFPQHQHSQV GIPRQPQLRP
201: PLAQPGIQLA GPVRTPVESG LCSRRLMQYL YHKRYRPDNN PITYWRKLID EYFAPRSRER WCVSSYEKPG NTSVAIPQTC PGTWRCDICN THSGKGYEDN
301: QQYYFLRKPL RIKIANKKAT SEILPRLCQI RFDHGVKDEY LFLDMPNEFR LPNGLLLLEH AKVVQKSIYE HQHVTHEGQL RIIFTPELKI MSWEFCSRKH
401: DEYVTRKFLT DQVTHMLRAT QNYQATVTKN GPAGLSNDEA QNACNQFASA SRQLAKNIDH HSLNEHGLSK RYVRCLQISE VVNHMKDLIE FSHKNKLGPI
501: EGLKNYSKLT AGPKLTVQNL HDSKAVKTEI SPHVNNEVPG VGAISNNPQN PAAQSNYQHM LRSSSANQLL QQEASQNAAA MNSYQNMFRS SSANQGLLQQ
601: EASQNAAALN NYQNMLRGSS PNQSLLQQEA SSIFKGPTAV HSGIQLEASR SFRAAQLGQF QHPMSFQQGM SQHQHNNFQG LGASPQFQQH VINQLLQEAK
701: NTNSRALAHQ QQQQQHHQQQ QQQQQQHQQQ QQSPSTPNAN GGLASGAAVA NTAASGEQAQ HMNNGTAKGA ALMGMTGPSN LINSGAGMVQ RSSSFKSVSS
801: NPAASGGNAA TPKVESVHDM DDLEHLISHE LVESGLFMGE QPGDGGFSWN I
101: RASSVTSQPV IDAAAAFHAQ KKPRVDIRQD DILQQQLIQQ LLQGQSSLHL QGQHNPQLQA LIRQHKLAQI QQQQQHQLSQ QFPQHQHSQV GIPRQPQLRP
201: PLAQPGIQLA GPVRTPVESG LCSRRLMQYL YHKRYRPDNN PITYWRKLID EYFAPRSRER WCVSSYEKPG NTSVAIPQTC PGTWRCDICN THSGKGYEDN
301: QQYYFLRKPL RIKIANKKAT SEILPRLCQI RFDHGVKDEY LFLDMPNEFR LPNGLLLLEH AKVVQKSIYE HQHVTHEGQL RIIFTPELKI MSWEFCSRKH
401: DEYVTRKFLT DQVTHMLRAT QNYQATVTKN GPAGLSNDEA QNACNQFASA SRQLAKNIDH HSLNEHGLSK RYVRCLQISE VVNHMKDLIE FSHKNKLGPI
501: EGLKNYSKLT AGPKLTVQNL HDSKAVKTEI SPHVNNEVPG VGAISNNPQN PAAQSNYQHM LRSSSANQLL QQEASQNAAA MNSYQNMFRS SSANQGLLQQ
601: EASQNAAALN NYQNMLRGSS PNQSLLQQEA SSIFKGPTAV HSGIQLEASR SFRAAQLGQF QHPMSFQQGM SQHQHNNFQG LGASPQFQQH VINQLLQEAK
701: NTNSRALAHQ QQQQQHHQQQ QQQQQQHQQQ QQSPSTPNAN GGLASGAAVA NTAASGEQAQ HMNNGTAKGA ALMGMTGPSN LINSGAGMVQ RSSSFKSVSS
801: NPAASGGNAA TPKVESVHDM DDLEHLISHE LVESGLFMGE QPGDGGFSWN I
001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
Arabidopsis Description
SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.