CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89417	Canola	nucleus	42.89	54.81
CDY52362	Canola	nucleus	62.8	44.91
CDY50201	Canola	nucleus, plastid	61.18	44.13
CDX92713	Canola	nucleus, plastid	61.18	43.81
CDY54085	Canola	nucleus, plastid	62.4	43.55
CDX92714	Canola	cytosol	46.95	43.42
KRG88471	Soybean	nucleus, plastid	34.96	40.19
Solyc03g026190.2.1	Tomato	plastid	43.9	38.3
CDY67669	Canola	mitochondrion, nucleus	16.06	33.19
KRH38603	Soybean	plastid	35.77	33.15
CDY30691	Canola	nucleus	44.11	28.63
KRH38604	Soybean	nucleus	46.75	28.47
GSMUA_Achr1P16220_001	Banana	nucleus	40.04	28.18
KRH09131	Soybean	nucleus, plastid	48.37	27.39
VIT_16s0100g00500.t01	Wine grape	plastid	47.97	27.31
KRH09132	Soybean	plastid	47.36	26.51
GSMUA_Achr1P07930_001	Banana	nucleus	41.26	25.57
PGSC0003DMT400037024	Potato	plastid	47.56	25.55
KXG34470	Sorghum	nucleus, plastid	38.21	25.47
GSMUA_Achr10P...	Banana	nucleus	39.23	24.9
KXG19170	Sorghum	plastid	37.8	23.82
Zm00001d018890_P006	Maize	nucleus, plastid	36.38	23.77
Zm00001d045516_P006	Maize	nucleus, plastid	37.4	23.74
Zm00001d035990_P002	Maize	plastid	36.59	23.08
TraesCS7A01G520700.1	Wheat	nucleus	37.2	22.68
Os06t0126000-02	Rice	cytosol, nucleus	37.6	22.51
TraesCS7B01G437100.1	Wheat	plastid	36.79	22.43
HORVU7Hr1G115870.4	Barley	plastid	36.59	22.36
CDY14963	Canola	nucleus, plastid	33.13	22.09
GSMUA_Achr2P03310_001	Banana	nucleus	35.37	21.56
CDY40943	Canola	nucleus, plastid	33.54	21.32
TraesCS7D01G510400.2	Wheat	nucleus	37.4	21.17
GSMUA_Achr7P05870_001	Banana	nucleus	12.2	20.98
TraesCS7D01G146100.2	Wheat	nucleus, plastid	35.77	20.9
TraesCS7A01G144600.3	Wheat	nucleus, plastid	35.98	20.7
TraesCS7B01G047100.4	Wheat	plastid	35.57	20.56
TraesCS7D01G050000.5	Wheat	nucleus, plastid	35.57	20.42
HORVU7Hr1G010050.2	Barley	nucleus, plastid	36.18	20.34
TraesCS4A01G441500.1	Wheat	nucleus, plastid	35.57	20.28
HORVU7Hr1G029650.10	Barley	plastid	35.57	20.02
TraesCS7A01G054900.2	Wheat	nucleus, plastid	35.37	19.84
CDY70167	Canola	cytosol, mitochondrion, nucleus	9.15	15.85
CDY69476	Canola	nucleus	6.1	10.99

Protein Annotations

EnsemblPlants:CDY57709	EnsemblPlantsGene:GSBRNA2T00022554001	InterPro:LIM-bd/SEUSS	ncoils:Coil	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12
PFAM:PF01803	ProteinID:CDY57709	ProteinID:CDY57709.1	SEG:seg	UniParc:UPI0004EF0D9C	UniProt:A0A078J2H3
MapMan:35.1	:	:	:	:	:

Description

BnaC01g41650DBnaC01g41650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2H3]

Coordinates

chrLK033597:+:34364..37492

Molecular Weight (calculated)

54761.1 Da

IEP (calculated)

9.098

GRAVY (calculated)

-0.503

Length

492 amino acids

Sequence
(BLAST)

001: MERSGGINNM RLPTSPMSFP SSNINIPGSL VLDGSASIQH LSPQQQQQAG QAAAVSTSVD PASGPRRKES SVVSFASAAE TKTTTDSSIL LQQQQLLRQQ
101: QGTQQIIPPI ARKMMMYLYH PQQRPAENCI TYWKKFVAEY FSPRANQRLC LSQYANAGKH ALGMFPQASP DKWQCDLCGT KSGEGFEATF DVLARLNEIK
201: FASGIIDELL YMDHPRENRF SNGLMLLEYR KAVQETVHEQ FRVVREGHLR IIFSKDLKIL SWEFCARRHE EFLLRRLIAP QVNQLLQVAQ KCQTTISESG
301: SEGVSQQDLK SNSNMVLGAG RQLAKFMELQ SLNDLGYPKR YIRTLQISEV VKSMKDLMNF TGDHKLGPIE GLKRLLEQTA TAKLQRQKMQ EMEQLGNSGA
401: IYGSSQAQMA LTSGTMNDLT GNNNNSNQTL GGRVPSRNNS FTAASNNNLH LSKDVSVTEL SHGFSDDGFF NNSDIYGSLK ISEQNRGTSS LT

Best Arabidopsis Sequence Match ( AT4G25520.1 )
(BLAST)

001: MNRTVVSGAV ESSFSLTDAV GTEALNMQRS SGINNNMRIP TSPMSFSSNS VNIPGSLVLD GSAASMQHLP QQQQQQLLQQ QTGQGSVPMR ENNYSHVDKK
101: PRLEVKQEDM LQQQILQQLI QRQDPTGRNP QMQALLQQQR LRQHQQMLQS MSPSQRLQLQ QQQQLRQQLQ QQGTQQIPPN VRPYEVGVCA RKLMMYLYHL
201: QQRPAENCIT YWRKFVAEYF SPRAKQRLCL SQYESAGHHA LGMFPQAAPD MWQCDLCGTK SGKGFEATFD VLARLIEIKF ASGIIDELLY LDHPRENRFP
301: NGLMMLEYRK AVQETVHEQF RVVREGHLRI IFSQDLKILS WEFCARRHEE LLLRRLIAPQ VNQLLQVAQK CQSTISESGS EGVSQQDLQS NSNMVLGAGR
401: QLAKFMELQS LNDLGYPKRY IRTLQISEVV KSMKDLMNFT GEQKIGPIEG LKRLLEQTVT VKLQKQKMQE MEQFGNNGAI NGPVQAQMVL TSGTMNGSTG
501: NNTNNHHQIV GRGAMSGPAE GQMVISSGTV SGATANNNSN NHNQIVGRGA MNGSAQAAAA LTNYQSMLMR QNAMNNPNSN TGKQEGFSSQ NPTPNSNQSP
601: SSSSQQRHNL VTGGFPNSPQ MQQQQRTMNG PTNILPQNHP HQLQSPHSHG NTPEQQMLHQ LLQEMSENGG SVQQQQAFSG QSGSNSNAER NTTASTSNIS
701: GGGRAPSRNN SFKAASNNNL HFSEDISITD HDFSEDGFFN NNDIYGGL

Arabidopsis Description

SLK1Probable transcriptional regulator SLK1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVM7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.