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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 4
  • mitochondrion 1
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:mitochondrion, nucleus, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G095100.1
TraesCS1A01G392300.1
TraesCS1B01G123100.1
TraesCS1B01G420500.1
TraesCS1D01G103800.1
TraesCS1D01G400500.1
TraesCS2A01G267400.1
TraesCS2A01G291900.1
TraesCS2A01G292000.1
TraesCS2B01G268200.1
TraesCS2B01G308400.1
TraesCS2B01G308500.1
TraesCS2D01G256400.1
TraesCS2D01G289900.2
TraesCS2D01G290000.1
TraesCS3A01G271400.1
TraesCS3B01G305100.1
TraesCS3D01G271000.1
TraesCS4A01G251800.1
TraesCS4A01G256700.1
TraesCS4A01G291900.1
TraesCS4A01G292000.1
TraesCS4A01G292100.1
TraesCS4A01G292200.1
TraesCS4B01G021900.2
TraesCS4B01G022000.1
TraesCS4B01G057900.1
TraesCS4D01G019600.1
TraesCS4D01G019800.1
TraesCS4D01G019900.1
TraesCS4D01G058000.1
TraesCS5A01G370200.1
TraesCS5A01G405900.1
TraesCS5B01G372500.1
TraesCS5B01G410600.1
TraesCS5D01G379700.1
TraesCS5D01G415900.1
TraesCS7A01G334800.1
TraesCS7B01G246300.1
TraesCS7D01G342300.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G62090.1 TraesCS1A01G095100.1 AT2G47700.1 21798944
AT5G62090.1 TraesCS1B01G123100.1 AT2G47700.1 21798944
AT5G62090.1 TraesCS1D01G103800.1 AT2G47700.1 21798944
AT5G62090.1 TraesCS2A01G291900.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS2A01G292000.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS2B01G308400.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS2B01G308500.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS2D01G289900.2 AT3G44720.1 21798944
AT5G62090.1 TraesCS2D01G290000.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS5A01G370200.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS5B01G372500.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS5D01G379700.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS1A01G392300.1 AT3G58630.1 21798944
AT5G62090.1 TraesCS1B01G420500.1 AT3G58630.1 21798944
AT5G62090.1 TraesCS1D01G400500.1 AT3G58630.1 21798944
AT5G62090.1 TraesCS3A01G271400.1 AT3G58630.1 21798944
AT5G62090.1 TraesCS3B01G305100.1 AT3G58630.1 21798944
AT5G62090.1 TraesCS3D01G271000.1 AT3G58630.1 21798944
AT5G62090.1 TraesCS2A01G267400.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS2B01G268200.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS2D01G256400.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4A01G251800.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4A01G256700.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4A01G291900.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4A01G292000.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4A01G292100.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4A01G292200.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4B01G021900.2 AT4G08150.1 21798944
AT5G62090.1 TraesCS4B01G022000.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4B01G057900.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4D01G019600.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4D01G019800.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4D01G019900.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4D01G058000.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS5A01G405900.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS5B01G410600.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS5D01G415900.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS7A01G334800.1 AT5G53950.1 21798944
AT5G62090.1 TraesCS7B01G246300.1 AT5G53950.1 21798944
AT5G62090.1 TraesCS7D01G342300.1 AT5G53950.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7D01G146100.2 Wheat nucleus, plastid 96.96 98.46
TraesCS4A01G441500.1 Wheat nucleus, plastid 95.67 94.79
TraesCS7B01G047100.4 Wheat plastid 92.16 92.6
TraesCS7A01G054900.2 Wheat nucleus, plastid 94.97 92.59
HORVU7Hr1G029650.10 Barley plastid 92.16 90.16
HORVU7Hr1G010050.2 Barley nucleus, plastid 91.81 89.71
TraesCS7A01G520700.1 Wheat nucleus 71.11 75.34
Os06t0126000-02 Rice cytosol, nucleus 63.39 65.94
KXG19170 Sorghum plastid 55.44 60.69
KXG34470 Sorghum nucleus, plastid 51.81 60.03
Zm00001d045516_P006 Maize nucleus, plastid 53.68 59.23
Zm00001d035990_P002 Maize plastid 53.68 58.85
Zm00001d018890_P006 Maize nucleus, plastid 48.19 54.71
GSMUA_Achr7P05870_001 Banana nucleus 15.44 46.15
Solyc03g026190.2.1 Tomato plastid 28.42 43.09
GSMUA_Achr1P16220_001 Banana nucleus 34.04 41.63
KRG88471 Soybean nucleus, plastid 20.82 41.59
KRH38603 Soybean plastid 25.15 40.49
GSMUA_Achr1P07930_001 Banana nucleus 35.91 38.66
GSMUA_Achr10P... Banana nucleus 34.04 37.55
KRH38604 Soybean nucleus 35.2 37.25
CDX92713 Canola nucleus, plastid 29.01 36.1
CDY57709 Canola nucleus, plastid 20.7 35.98
CDX89417 Canola nucleus 15.79 35.06
VIT_16s0100g00500.t01 Wine grape plastid 35.2 34.84
Bra019159.1-P Field mustard nucleus, plastid 27.6 34.6
CDY50201 Canola nucleus, plastid 27.6 34.6
AT4G25515.1 Thale cress nucleus, plastid 27.72 34.6
KRH09131 Soybean nucleus, plastid 35.09 34.52
CDY52362 Canola nucleus 27.72 34.45
CDY54085 Canola nucleus, plastid 28.3 34.33
KRH09132 Soybean plastid 35.09 34.13
CDY30691 Canola nucleus 29.94 33.77
GSMUA_Achr2P03310_001 Banana nucleus 31.7 33.58
VIT_02s0025g04390.t01 Wine grape vacuole 26.78 33.33
Bra010458.1-P Field mustard nucleus, plastid 23.27 33.0
AT4G25520.1 Thale cress plastid 28.77 32.89
CDX92714 Canola cytosol 20.23 32.52
PGSC0003DMT400037024 Potato plastid 34.62 32.31
AT5G62090.1 Thale cress nucleus 30.64 32.11
Bra013897.1-P Field mustard nucleus 14.5 31.08
Bra029289.1-P Field mustard nucleus 22.81 29.5
TraesCS4A01G211800.1 Wheat nucleus, plastid 23.16 21.76
TraesCS4A01G211700.2 Wheat nucleus, plastid 23.27 21.33
Protein Annotations
EnsemblPlants:TraesCS7A01G144600.3EnsemblPlantsGene:TraesCS7A01G144600InterPro:LIM-bd/SEUSSncoils:CoilPANTHER:PTHR10378PANTHER:PTHR10378:SF12
PFAM:PF01803SEG:segMapMan:35.1:::
Description
No Description!
Coordinates
chr7A:+:95801526..95806767
Molecular Weight (calculated)
94646.7 Da
IEP (calculated)
9.087
GRAVY (calculated)
-0.773
Length
855 amino acids
Sequence
(BLAST)
001: MSGAPRSNLG LVPRDMNGSL PVSTTNSSGP SIGVSSLVTD GNSSLSGGAQ FQQSTSMNAD SFTRLPASPM SFSSNNISGS SVIDGSIMQQ SPPQEQMQKR
101: RASSVTSQPV IDAAAAFHAQ KKPRVDIRQD DILQQQLIQQ LLQGQSSLHL QGQHNPQLQA LIRQHKLAQI QQQQQHQLSQ QFPQHQHSQV GIPRQPQLRP
201: PLAQPGIQLA GPVRTPVESG LCSRRLMQYL YHKRYRPDDN PITYWRKLID EYFAPRSRER WCVSSYEKPG NTSVAIPQTS PGTWRCDICN THSGKGYEAT
301: SEILPRLCQI RFDHGVKDEY LFLDMPNEFR LPNGLLLLEH AKVVQKSIYE HQHVTHEGQL RIIFTPELKI MSWEFCSRKH DEYVTRKFLT DQVTHMLRAT
401: QNYQATVTKN GPAGLSNDEA QNACNQFASA SRQLAKNIDH HSLNEHGLSK RYVRCLQISE VVNHMKDLIE FSHKNKLGPI EGLKNYPKQT AGPKLTVQNL
501: HDSKAVKTEI SPHVNNEVPG VGAISNNPQN PAAQSNYQHM LRSSSANQLL QQEASQNAAA MNSYQNMFRS SSANQGLLQQ EASQNAGALN NYQNMLRGSS
601: PNQSLLQQEA SSIFKGPTAV HSGIQLEASR SFRAAQLGQF QHPMSFQQGM SQHQHNNFQG LGASPQFQQH VINQLLQEAK NSNSRALAHQ QQQQQHHQQQ
701: QQQHHQQQQQ QQHHQQQQQQ QLQHQQQQQQ HQQQQQSPST PNANGGLASG AAVANTAASG EQAQHMNNGT AKGAALMGMT GPSNLINSGA GMVQRSSSFK
801: SVSSNPAASG GNAATPKAES VHDMDDLEHL ISHELVESGL FMGEQPGDGG FSWNI
Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)
001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS
Arabidopsis Description
SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.