Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G101500.1 | Wheat | nucleus, plastid | 98.02 | 98.24 |
| TraesCS4B01G104300.1 | Wheat | nucleus, plastid | 97.69 | 97.48 |
| HORVU4Hr1G017160.3 | Barley | nucleus, plastid | 95.05 | 93.82 |
| TraesCS4A01G211700.2 | Wheat | nucleus, plastid | 87.14 | 84.99 |
| Os11t0207000-01 | Rice | nucleus, plastid | 82.42 | 82.06 |
| Os11t0207100-01 | Rice | nucleus | 83.63 | 81.56 |
| KXG28056 | Sorghum | nucleus, plastid | 79.78 | 77.4 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 78.57 | 76.88 |
| Zm00001d007295_P003 | Maize | nucleus, plastid | 76.7 | 76.28 |
| CDY67669 | Canola | mitochondrion, nucleus | 15.38 | 58.82 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 50.33 | 52.28 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 50.99 | 50.82 |
| KRH64564 | Soybean | nucleus, plastid | 50.77 | 50.71 |
| KRH15928 | Soybean | nucleus, plastid | 49.78 | 49.51 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 45.27 | 49.16 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 48.35 | 49.0 |
| KRH53367 | Soybean | nucleus | 51.1 | 48.39 |
| KRH18102 | Soybean | plastid | 49.34 | 48.38 |
| CDY14963 | Canola | nucleus, plastid | 39.12 | 48.24 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 37.14 | 45.55 |
| CDY40943 | Canola | nucleus, plastid | 38.68 | 45.48 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 38.68 | 45.48 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 41.98 | 43.56 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 41.21 | 43.0 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 11.43 | 36.62 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 38.46 | 36.46 |
| CDY69476 | Canola | nucleus | 7.8 | 26.01 |
| TraesCS7A01G520700.1 | Wheat | nucleus | 21.76 | 24.54 |
| TraesCS7A01G144600.3 | Wheat | nucleus, plastid | 21.76 | 23.16 |
| PGSC0003DMT400092079 | Potato | nucleus | 18.35 | 22.6 |
| TraesCS4A01G441500.1 | Wheat | nucleus, plastid | 21.32 | 22.48 |
| TraesCS7A01G054900.2 | Wheat | nucleus, plastid | 21.43 | 22.23 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G211800.1 | EnsemblPlantsGene:TraesCS4A01G211800 | InterPro:LIM-bd/SEUSS | ncoils:Coil | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF17 |
| PFAM:PF01803 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:506709256..506720722
Molecular Weight (calculated)
99133.0 Da
IEP (calculated)
8.819
GRAVY (calculated)
-0.707
Length
910 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSGPPNPM GPGQPMGAAS LLRTNSSLLS GGQQGMGSGG MLQSQSPFSS LVSPRTQFGG NGLLGGSSNV SPLLNRQSFG NGGAVPGPGQ MANGGLPMNT
101: LQQRGGLDGA GDLIGMGGSD PMSSSQVSLG NHLGSDNLQQ QQQKMDMQDL QQQQQQHHHQ LPMSYNQQQV PTQPLQLHAT VKMENGGSIG GVKLEQQMGQ
201: LDQNGPAQMM RNAGNVKFEP HQLQSLRGLG AVKMEQPNSD PSAFLQQQQQ QQQHHLLQLT KQNPQAAAAA QLNLLQQQRI MHMQQQQQQQ ILKNLPLQRN
301: QLQQQQQQQQ QQQQHQHHQQ QLLRQQSLNI RTPGKPASYE PGTCAKRLTH YMYHQQNRPQ DNNIEYWRNF VNEYFAPTAK KRWCVSLYGT GRQTTGVFPQ
401: DVWHCEICNR KPGRGFETTV EVLPRLCQIK YASGTLEELL YIDMPRESKN ASGQIVLDYT KAIQESVFEQ LRVVREGHLR IIFNPDLKIA SWEFCARRHE
501: ELIPRRSIIP QVSQLGAVVQ KYQAAAQNPT SLTTQDMQNN CNSFVACARQ LAKALEVPLV NDLGYTKRYV RCLQIAEVVN CMKDLIDHSK QTGSGPIDSL
601: HKFPRRTPSG INPLQPQQQQ PEEQQSVPQS SNQSGQNSAP MAGAQASASA NADVTSNNSL SCAPSTSAPS PTVMGILQGS IDSSQDHLMS SANGQYNSGN
701: NGAIPKVNPA SSLQSNPSTS FPSQVPISSN NNMMPALQNT NQLSSPAVSS NLPPMQPPAT RSQEPEQSDA QSSVERILQE MMSSQMNGVG HAGNDMKRPN
801: GFTPGINGVN YLVGNAVTNH SGVGGMGLGA MGGFGSNPTA NGLRMAVTNN AMAMNGRMGM HQSAHDLSQL GQQQQQQQQQ QQHDIGNQLL GGLRAGNSFN
901: NLQYDWKPSQ
101: LQQRGGLDGA GDLIGMGGSD PMSSSQVSLG NHLGSDNLQQ QQQKMDMQDL QQQQQQHHHQ LPMSYNQQQV PTQPLQLHAT VKMENGGSIG GVKLEQQMGQ
201: LDQNGPAQMM RNAGNVKFEP HQLQSLRGLG AVKMEQPNSD PSAFLQQQQQ QQQHHLLQLT KQNPQAAAAA QLNLLQQQRI MHMQQQQQQQ ILKNLPLQRN
301: QLQQQQQQQQ QQQQHQHHQQ QLLRQQSLNI RTPGKPASYE PGTCAKRLTH YMYHQQNRPQ DNNIEYWRNF VNEYFAPTAK KRWCVSLYGT GRQTTGVFPQ
401: DVWHCEICNR KPGRGFETTV EVLPRLCQIK YASGTLEELL YIDMPRESKN ASGQIVLDYT KAIQESVFEQ LRVVREGHLR IIFNPDLKIA SWEFCARRHE
501: ELIPRRSIIP QVSQLGAVVQ KYQAAAQNPT SLTTQDMQNN CNSFVACARQ LAKALEVPLV NDLGYTKRYV RCLQIAEVVN CMKDLIDHSK QTGSGPIDSL
601: HKFPRRTPSG INPLQPQQQQ PEEQQSVPQS SNQSGQNSAP MAGAQASASA NADVTSNNSL SCAPSTSAPS PTVMGILQGS IDSSQDHLMS SANGQYNSGN
701: NGAIPKVNPA SSLQSNPSTS FPSQVPISSN NNMMPALQNT NQLSSPAVSS NLPPMQPPAT RSQEPEQSDA QSSVERILQE MMSSQMNGVG HAGNDMKRPN
801: GFTPGINGVN YLVGNAVTNH SGVGGMGLGA MGGFGSNPTA NGLRMAVTNN AMAMNGRMGM HQSAHDLSQL GQQQQQQQQQ QQHDIGNQLL GGLRAGNSFN
901: NLQYDWKPSQ
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.