Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G101700.1 | Wheat | nucleus, plastid | 98.93 | 98.61 |
| TraesCS4B01G104400.2 | Wheat | nucleus, plastid | 98.71 | 98.61 |
| HORVU4Hr1G017140.2 | Barley | plastid | 94.86 | 94.35 |
| TraesCS4A01G211800.1 | Wheat | nucleus, plastid | 84.99 | 87.14 |
| Os11t0207000-01 | Rice | nucleus, plastid | 81.14 | 82.82 |
| Os11t0207100-01 | Rice | nucleus | 82.64 | 82.64 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 79.31 | 79.57 |
| KXG28056 | Sorghum | nucleus, plastid | 79.64 | 79.21 |
| Zm00001d007295_P003 | Maize | nucleus, plastid | 76.63 | 78.14 |
| CDY67669 | Canola | mitochondrion, nucleus | 14.58 | 57.14 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 50.27 | 53.54 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 50.16 | 51.26 |
| KRH64564 | Soybean | nucleus, plastid | 49.84 | 51.04 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 44.59 | 49.64 |
| KRH15928 | Soybean | nucleus, plastid | 48.66 | 49.62 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 47.59 | 49.44 |
| KRH53367 | Soybean | nucleus | 50.16 | 48.7 |
| KRH18102 | Soybean | plastid | 48.23 | 48.49 |
| CDY14963 | Canola | nucleus, plastid | 37.83 | 47.83 |
| CDY40943 | Canola | nucleus, plastid | 38.48 | 46.38 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 38.48 | 46.38 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 36.23 | 45.55 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 40.84 | 43.69 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 40.73 | 43.33 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 11.47 | 37.68 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 37.83 | 36.77 |
| CDY69476 | Canola | nucleus | 7.61 | 26.01 |
| TraesCS7A01G520700.1 | Wheat | nucleus | 21.65 | 25.03 |
| TraesCS7A01G144600.3 | Wheat | nucleus, plastid | 21.33 | 23.27 |
| PGSC0003DMT400092079 | Potato | nucleus | 17.9 | 22.6 |
| TraesCS4A01G441500.1 | Wheat | nucleus, plastid | 20.79 | 22.48 |
| TraesCS7A01G054900.2 | Wheat | nucleus, plastid | 20.79 | 22.12 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G211700.2 | EnsemblPlantsGene:TraesCS4A01G211700 | InterPro:LIM-bd/SEUSS | ncoils:Coil | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF17 |
| PFAM:PF01803 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:506164630..506171334
Molecular Weight (calculated)
101186.0 Da
IEP (calculated)
8.641
GRAVY (calculated)
-0.692
Length
933 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSGPPNPM GPGQPVGGAS LLRTSSSLLS GGQQGMGGGG GMLQSQSPFS SLVSPRSQFG GNGLLGATSN VSSLLNRSSF GNGSPVPSPG QMPNGGLPMN
101: TLQQRGGLDG AGDFTGTGGS DPMSFPSSSS QVSLGNHLGS DILQQQQMDV RDLQHQQEQQ HQQHQLPMSY NQQQLPSQQS QPQAAVKLEN GGSIGGVKLE
201: QQMGLPDQNG PVQMIRNAGN VKFESQQLQG LRGLGAVKME QSSSDPSAFL QQQQQQQQHH HNLLQLTKQN PQAAAAAQLN LLQQQRLLHM QQQHQQQHQQ
301: ILKNLPLQRN QLQQQQQQQQ QQQQQQQQQQ LLRQQSLNMR TPGKLAPYEP GTCAKRLTHY MYHQQNRPQD NNIEYWRNFV NEYFAPTAKK RWCVSLYGSG
401: RQTTGVFPQD VWHCEICNRK PGRGFETTVE VLPRLCQIKY ASGTLEELLY IDMPRESQNA SGQIILDYAK AIQESVFDQL RVVREGHLRI VFNPDLKIAS
501: WEFCARRHEE LIPRRSIIPQ VSQLGTVVQK YQAAAQSSTS LTTQDMQNNC NSFVACARQL AKALEVPLVN DLGYTKRYVR CLQIAEVVNC MKDLIDYSRQ
601: TGSGPINSLH NFPRRSPAGI NPLQPQQQQP EEQQSVPQSS NQSGQNSAPM AGVQASASAN ADVTSNSSLT CAPSTSAPSP SVVGLLQGSV NSRQDHPMGT
701: VNGLYNSGDD GVIPKVNSTS SLQSNPSPSF SSQVPTSSNN NMMPAPQNTN QLSSPAVSSS NLPPVQPPAT RAQEPEPSDS QSSVQRILQE MMSSQMNGVG
801: HGANDMKRPN GLAPGINGVN CLVGNAVTNH SGVGGMGFGA MGGFGSNSAA SGLRMAMANN AMANSGMAMN GRMGMGMHHS AHDLSQLGQQ QQQQNQQQHQ
901: QHQQQHDIGN QLLGGLRAAN SFNNLQYDWK PSQ
101: TLQQRGGLDG AGDFTGTGGS DPMSFPSSSS QVSLGNHLGS DILQQQQMDV RDLQHQQEQQ HQQHQLPMSY NQQQLPSQQS QPQAAVKLEN GGSIGGVKLE
201: QQMGLPDQNG PVQMIRNAGN VKFESQQLQG LRGLGAVKME QSSSDPSAFL QQQQQQQQHH HNLLQLTKQN PQAAAAAQLN LLQQQRLLHM QQQHQQQHQQ
301: ILKNLPLQRN QLQQQQQQQQ QQQQQQQQQQ LLRQQSLNMR TPGKLAPYEP GTCAKRLTHY MYHQQNRPQD NNIEYWRNFV NEYFAPTAKK RWCVSLYGSG
401: RQTTGVFPQD VWHCEICNRK PGRGFETTVE VLPRLCQIKY ASGTLEELLY IDMPRESQNA SGQIILDYAK AIQESVFDQL RVVREGHLRI VFNPDLKIAS
501: WEFCARRHEE LIPRRSIIPQ VSQLGTVVQK YQAAAQSSTS LTTQDMQNNC NSFVACARQL AKALEVPLVN DLGYTKRYVR CLQIAEVVNC MKDLIDYSRQ
601: TGSGPINSLH NFPRRSPAGI NPLQPQQQQP EEQQSVPQSS NQSGQNSAPM AGVQASASAN ADVTSNSSLT CAPSTSAPSP SVVGLLQGSV NSRQDHPMGT
701: VNGLYNSGDD GVIPKVNSTS SLQSNPSPSF SSQVPTSSNN NMMPAPQNTN QLSSPAVSSS NLPPVQPPAT RAQEPEPSDS QSSVQRILQE MMSSQMNGVG
801: HGANDMKRPN GLAPGINGVN CLVGNAVTNH SGVGGMGFGA MGGFGSNSAA SGLRMAMANN AMANSGMAMN GRMGMGMHHS AHDLSQLGQQ QQQQNQQQHQ
901: QHQQQHDIGN QLLGGLRAAN SFNNLQYDWK PSQ
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.