Factsheet for VIT_18s0001g15320.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64564	Soybean	nucleus, plastid	78.97	79.14
KRH15928	Soybean	nucleus, plastid	75.68	75.52
KRH53367	Soybean	nucleus	79.19	75.23
Solyc06g059760.2.1	Tomato	nucleus, plastid	69.33	70.49
CDY67669	Canola	mitochondrion, nucleus	17.74	68.07
KRH18102	Soybean	plastid	67.69	66.59
Solyc06g059750.2.1	Tomato	nucleus, plastid	59.26	64.56
VIT_04s0044g01260.t01	Wine grape	plastid	57.39	60.09
GSMUA_Achr10P...	Banana	nucleus, plastid	55.75	57.91
CDY40943	Canola	nucleus, plastid	46.99	55.43
GSMUA_Achr2P20700_001	Banana	plastid	51.92	55.31
Bra032192.1-P	Field mustard	nucleus, plastid	46.66	55.04
CDY14963	Canola	nucleus, plastid	43.7	54.06
GSMUA_Achr6P18610_001	Banana	plastid	51.7	53.88
GSMUA_Achr3P02850_001	Banana	nucleus	52.57	53.57
Bra036931.1-P	Field mustard	nucleus, plastid	43.37	53.37
AT1G43850.1	Thale cress	nucleus, plastid	51.26	53.36
Os11t0207000-01	Rice	nucleus, plastid	52.25	52.19
Os11t0207100-01	Rice	nucleus	52.57	51.45
Zm00001d023706_P002	Maize	nucleus	51.04	51.38
KXG23150	Sorghum	nucleus	52.14	51.35
Zm00001d007295_P003	Maize	nucleus, plastid	51.26	51.15
TraesCS4D01G101500.1	Wheat	nucleus, plastid	50.82	51.1
TraesCS4A01G211800.1	Wheat	nucleus, plastid	50.82	50.99
Zm00001d041803_P001	Maize	nucleus	50.71	50.55
HORVU4Hr1G017160.3	Barley	nucleus, plastid	51.04	50.54
TraesCS4B01G104300.1	Wheat	nucleus, plastid	50.38	50.44
HORVU4Hr1G017140.2	Barley	plastid	51.81	50.43
TraesCS4B01G104400.2	Wheat	nucleus, plastid	51.48	50.32
KXG28056	Sorghum	nucleus, plastid	51.7	50.32
TraesCS4A01G211700.2	Wheat	nucleus, plastid	51.26	50.16
Zm00001d049125_P002	Maize	nucleus, plastid	51.04	50.11
TraesCS4D01G101700.1	Wheat	nucleus, plastid	51.37	50.11
CDY70167	Canola	cytosol, mitochondrion, nucleus	13.03	41.9
GSMUA_Achr5P25900_001	Banana	nucleus	40.53	38.54
VIT_02s0025g04390.t01	Wine grape	vacuole	24.1	32.02
VIT_16s0100g00500.t01	Wine grape	plastid	28.48	30.09
CDY69476	Canola	nucleus	7.45	24.91
PGSC0003DMT400092079	Potato	nucleus	19.28	23.82

Protein Annotations

EntrezGene:100241984	wikigene:100241984	MapMan:35.1	ProteinID:CCB46094	ProteinID:CCB46094.1	ncoils:Coil
UniProt:F6H093	EMBL:FN595227	InterPro:LIM-bd/SEUSS	EntrezGene:LOC100241984	wikigene:LOC100241984	PFAM:PF01803
PANTHER:PTHR10378	PANTHER:PTHR10378:SF17	UniParc:UPI0001985274	ArrayExpress:VIT_18s0001g15320	EnsemblPlantsGene:VIT_18s0001g15320	EnsemblPlants:VIT_18s0001g15320.t01
unigene:Vvi.1038	unigene:Vvi.26414	RefSeq:XP_002265920	RefSeq:XP_002265920.1	RefSeq:XP_010664872.1	SEG:seg

Description

No Description!

Coordinates

chr18:-:13446395..13458670

Molecular Weight (calculated)

98754.1 Da

IEP (calculated)

9.073

GRAVY (calculated)

-0.645

Length

913 amino acids

Sequence
(BLAST)

001: MVPSGPPTPI GGAQPVPPSL LRSNSGMLGA QAGPVPPQTG FPSLVSPRTQ YNNMNLLGNV PSVSSLLSQS FGNGGSNPGL SGPGSGQRGG IDAGAESDPL
101: SGVGNGLGFT PPASFVPTNM ANPGSAGQGQ QFQNPSGNQM LPDQQQSQQL EAQNFQHGQQ PLQQFSAPLN TQQQQQYQSI RGGLGGVGPV KLEPQVTNDQ
201: HGQQQQLQSL RNIGPVKLEP QQIPTMRSLA PVKMEPQHSD QSLFLHQQQQ QQQQHQQQQH QQQQQQFLHM SRQSSQATAA QISLLQQQRY MQLQQQQQQQ
301: LLKAIPQQRS QLQQQQFQAQ NLPLRSPVKP GYEPGMCARR LTYYMYQQQH KPTDNNIEFW RKFVAEYFAP HAKKKWCVSM YGSGRQTTGV FPQDVWHCEI
401: CNRKPGRGFE ATVEVLPRLF KIKYESGTLE ELLYVDMPRE YQNSSGQIIL DYAKAIQESV FEQLRVVREG QLRIVFSPDL KICSWEFCAR RHEELIPRRL
501: LIPQVSQLGA AAQKYQSATQ NASSNLSVPE LQSNCNMFVA SARQLAKALE VPLVNDLGYT KRYVRCLQIS EVVNSMKDLI DYSRNTGTGP MESLAKFPRR
601: TNASSGFHNQ AQQPEEQMQQ QQQQQQQTIA QNANNDPSSV QATAMQLASS NGVTSVNNSL NPASASTSSS TIVGLLHQNS MNSRQQNSMN NANSPYGGGA
701: VQIPSPGSSS SIPQPQPNPS PFQSPTPSSS NNPPQTSHGA LTAATHMSTA NSPANISMQQ PSLSGEADPS DSQSSVQKII QEMMMSSQLN GTAGMVSVGS
801: LGNDVKNVNG ILPTSNSTGL NGGLVGNGPG NSTPGIGGGG FGSMGGLGQS AMVNGMRAAM GNNSLTINGR VGMTPMTRDQ SINHQQDLGN QLLGGLGAVN
901: GFNNLQFDWK QSP

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.