CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90862
EER95753
EER97510
KXG23502

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43850.1	EER90862	AT1G69120.1	16854969
AT1G43850.1	EER95753	AT1G69120.1	16854969
AT1G43850.1	EER97510	AT1G69120.1	16854969
AT1G43850.1	KXG23502	AT1G69120.1	16854969

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049125_P002	Maize	nucleus, plastid	92.96	93.76
Zm00001d007295_P003	Maize	nucleus, plastid	90.72	93.01
Os11t0207000-01	Rice	nucleus, plastid	81.88	84.03
Os11t0207100-01	Rice	nucleus	82.2	82.64
TraesCS4D01G101700.1	Wheat	nucleus, plastid	79.96	80.13
TraesCS4B01G104400.2	Wheat	nucleus, plastid	79.64	79.98
TraesCS4D01G101500.1	Wheat	nucleus, plastid	77.4	79.96
TraesCS4A01G211800.1	Wheat	nucleus, plastid	77.4	79.78
TraesCS4A01G211700.2	Wheat	nucleus, plastid	79.21	79.64
TraesCS4B01G104300.1	Wheat	nucleus, plastid	77.29	79.5
HORVU4Hr1G017140.2	Barley	plastid	79.21	79.21
HORVU4Hr1G017160.3	Barley	nucleus, plastid	76.87	78.2
KXG23150	Sorghum	nucleus	70.04	70.87
CDY67669	Canola	mitochondrion, nucleus	14.71	57.98
GSMUA_Achr6P18610_001	Banana	plastid	49.79	53.31
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	50.32	51.7
KRH64564	Soybean	nucleus, plastid	48.83	50.27
Solyc06g059750.2.1	Tomato	nucleus, plastid	44.46	49.76
Solyc06g059760.2.1	Tomato	nucleus, plastid	47.44	49.55
KRH15928	Soybean	nucleus, plastid	48.29	49.51
Bra032192.1-P	Field mustard	nucleus, plastid	39.98	48.45
KRH18102	Soybean	plastid	47.87	48.38
CDY14963	Canola	nucleus, plastid	38.06	48.37
KRH53367	Soybean	nucleus	49.36	48.18
CDY40943	Canola	nucleus, plastid	39.55	47.93
Bra036931.1-P	Field mustard	nucleus, plastid	36.46	46.09
AT1G43850.1	Thale cress	nucleus, plastid	41.26	44.13
VIT_04s0044g01260.t01	Wine grape	plastid	40.83	43.92
CDY70167	Canola	cytosol, mitochondrion, nucleus	11.51	38.03
GSMUA_Achr5P25900_001	Banana	nucleus	38.27	37.4
KXG19170	Sorghum	plastid	22.07	26.5
KXG34470	Sorghum	nucleus, plastid	20.47	26.02
CDY69476	Canola	nucleus	7.14	24.54
PGSC0003DMT400092079	Potato	nucleus	17.8	22.6

Protein Annotations

EnsemblPlants:KXG28056	EnsemblPlantsGene:SORBI_3005G079800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:LIM-bd/SEUSS
ncoils:Coil	PANTHER:PTHR10378	PANTHER:PTHR10378:SF17	PFAM:PF01803	ProteinID:KXG28056	ProteinID:KXG28056.1
SEG:seg	UniParc:UPI00081AB71E	UniProt:A0A1B6PQW5	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr5:+:10479405..10488021

Molecular Weight (calculated)

101415.0 Da

IEP (calculated)

8.582

GRAVY (calculated)

-0.688

Length

938 amino acids

Sequence
(BLAST)

001: MMPSGPPNPM GPGQPVGGAA ASLLRTNSSL LSGGGQPGMM GGGGGGGGGM LSSQSPFSSL VSQRTQFGSN GLLGGASNVS SLLNRPPFGS GGPMQGPGSM
101: QGGGMQMSTL QQRAGLDGGG DFISAGGSDA LSFPSSSQVS LGNQMGSDNL QATSQQQQQQ MDAVQDMQHQ QLPMSYNQQQ LPPQHSQQLQ QPQATVKLEN
201: GGSMVSIKSE QQMGQPDQNG PGAQMMRSAS VKLEPQQLQA QMMRSLSSVK MEQQTSDPSA FLQQQQQQQQ QHHLLQLTKQ IRNCPDLVSM GGPNTIANPQ
301: AAAAAQLTLL QQQRILHMQQ QHQQQQQQQI LKNLPLQRNQ LQQQQQQHQQ QQQQQQLLRQ QSLNMRTPGK SPPYEPGTCA KRLTHYMYHQ QNRPQDNNIE
401: YWRNFVNEYF APNAKKRWCV SLYGSGRQTT GVFPQDVWHC EICNRKPGRG FETTVEVLPR LCQIKYASGT LEELLYIDMP RESQNTSGQI ILDYTKAIQE
501: SVFEQLRVVR EGHLRIVFNP DLKIASWEFC ARRHEELIPR RSIIPQVSNL GAVVQKYQAA SQNSTSLSAQ DMQNNCNSFV ACARQLAKAL EVPLVNDLGY
601: TKRYVRCLQI AEVVNCMKDL IDHSRQTGSG PIDSLHNFPR RTPSGVSTLQ PQQQQTEEQQ AIPQSSTQSG QNSAPMAGVQ PSASANGDVT SNNSLSCAPS
701: TSAPSPSVVG LLQNSMNSRQ DHPMSSTNGG PYNGGNAAIP KVNSTSSLQS NPSTSFPSPA PTTSNNSMMP APQNTNQLSS PTTSSSIPPM QPPATRPQEA
801: EQSDSQSSVQ KILQDLMSSQ MNGVGHSGNE MKTPNGLTHG VNGVNCLVGN AVTNNSGMGG MGFGAMSGFG HGMRTAMANN PMAMGARMGM NHGAHDLSQL
901: GQLHQQQQQQ HDIGNQLLGG FRSANGFNNI QYDWKPSQ

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.