Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0752800-02 | |
| Os07t0108900-02 | |
| Os07t0605200-01 | |
| Os12t0501700-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43850.1 | Os03t0752800-02 | AT1G69120.1 | 16854969 |
| AT1G43850.1 | Os07t0108900-02 | AT1G69120.1 | 16854969 |
| AT1G43850.1 | Os07t0605200-01 | AT1G69120.1 | 16854969 |
| AT1G43850.1 | Os12t0501700-00 | AT1G69120.1 | 16854969 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0207100-01 | Rice | nucleus | 96.17 | 94.21 |
| TraesCS4D01G101500.1 | Wheat | nucleus, plastid | 82.39 | 82.93 |
| TraesCS4B01G104300.1 | Wheat | nucleus, plastid | 82.28 | 82.46 |
| TraesCS4A01G211800.1 | Wheat | nucleus, plastid | 82.06 | 82.42 |
| TraesCS4B01G104400.2 | Wheat | nucleus, plastid | 83.7 | 81.91 |
| KXG28056 | Sorghum | nucleus, plastid | 84.03 | 81.88 |
| TraesCS4D01G101700.1 | Wheat | nucleus, plastid | 83.7 | 81.73 |
| TraesCS4A01G211700.2 | Wheat | nucleus, plastid | 82.82 | 81.14 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 82.17 | 80.75 |
| Zm00001d007295_P003 | Maize | nucleus, plastid | 80.74 | 80.66 |
| HORVU4Hr1G017140.2 | Barley | plastid | 82.49 | 80.38 |
| HORVU4Hr1G017160.3 | Barley | nucleus, plastid | 80.96 | 80.26 |
| CDY67669 | Canola | mitochondrion, nucleus | 15.32 | 58.82 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 51.2 | 53.42 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 52.19 | 52.25 |
| KRH64564 | Soybean | nucleus, plastid | 50.77 | 50.93 |
| KRH15928 | Soybean | nucleus, plastid | 50.0 | 49.95 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 45.62 | 49.76 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 48.8 | 49.67 |
| CDY14963 | Canola | nucleus, plastid | 39.5 | 48.92 |
| KRH53367 | Soybean | nucleus | 51.42 | 48.91 |
| KRH18102 | Soybean | plastid | 49.45 | 48.71 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 40.92 | 48.32 |
| CDY40943 | Canola | nucleus, plastid | 40.59 | 47.93 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 37.97 | 46.77 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 43.22 | 45.04 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 42.23 | 44.27 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 12.04 | 38.73 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 40.04 | 38.12 |
| CDY69476 | Canola | nucleus | 7.77 | 26.01 |
| Os06t0126000-02 | Rice | cytosol, nucleus | 21.23 | 23.6 |
| PGSC0003DMT400092079 | Potato | nucleus | 18.71 | 23.14 |
Protein Annotations
| EnsemblPlants:Os11t0207000-01 | EnsemblPlantsGene:Os11g0207000 | EntrezGene:4350031 | InterPro:LIM-bd/SEUSS | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF17 |
| PFAM:PF01803 | ProteinID:ABA91996.2 | ProteinID:BAF27825.1 | ProteinID:BAT13133.1 | RefSeq:XP_015616773.1 | SEG:seg |
| UniParc:UPI0000D89A08 | UniProt:Q2R940 | MapMan:35.1 | : | : | : |
Description
SEUSSLIM binding protein domain containing protein. (Os11t0207000-01);Hypothetical conserved gene. (Os11t0207000-02)
Coordinates
chr11:+:5399320..5407997
Molecular Weight (calculated)
99149.0 Da
IEP (calculated)
8.858
GRAVY (calculated)
-0.672
Length
914 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPSGPLNPM GPGQPVGAAA SLLRTSSSLL SGGQQGMGSG GGMIPSQSPF SSLVSPRTQF GANGLLGGGS NVSSLLNRPF GNGGHMLGPG LMPGGGGIPM
101: NTLQQQRGGL DGAGDLVGVG GSDPLSFPSS SQVSLGNQLG SDNLHQPPQH QQQQQQLDAM HDLQQQQHHQ QLPMSYNQQH LPPQPPQQPQ ATVKLENGGS
201: TGGVKLEPQM GQPDQNSSAQ MMRHASNVKI EPQQLQALRS LSAVKMEQPT SDPSAFLQQQ QQQQHLLQLT KQNPQAAAAA QLNLLQQQRI LQMQQQQQQQ
301: QQQILKNLPL QRNQLQQQQL LRQQSLNMRT PGKSAPYEPG TCAKRLTHYM YHQQNRPQDN NIEYWRNFVN EYFSPNAKKR WCVSLYGSGR QTTGVFPQDV
401: WHCEICNRKP GRGFETTVEV LPRLCQIKYA SGTLEELLYV DMPRESQNAS GQIVLDYTKA IQESVFEQLR VVREGHLRIV FNPDLKIASW EFCARRHEEL
501: IPRRSIIPQV SQLGAVVQKY QSAVQNSTNL STQDMQNNCN SFVACARQLA KALEVPLVND LGYTKRYVRC LQIAEVVNCM KDLIDYSRQN GSGPIASLHS
601: FPRRTSSGVS PHQSQQQQPE EQQSIPQSSN QSGQNAAPMT GVQASASANA DVTSNNSLSC APSTSAPSPS VVGLLQGSMN SRQDHPMSSA NGPYTSGNSA
701: AIPKVNSTTS LQSNPSTSFP SPMPTTSNNN MMPAPQSTNQ LSSPTTSSNL PPMQPPATRP QEPEPNESQS SVQRILQDLM MSPQMNGIGQ LGNDMKRPNG
801: LTSSVNGVNC LVGNAVTNNS GMGGMGFGAM GGLGPNHAAS GLRTAMVNNA MAISGRMGMN HSAHDLSQLG QLQQQQQHQQ QQQQQQHDLG NQLLNGLRAA
901: NSFNNLQYDW KPSQ
101: NTLQQQRGGL DGAGDLVGVG GSDPLSFPSS SQVSLGNQLG SDNLHQPPQH QQQQQQLDAM HDLQQQQHHQ QLPMSYNQQH LPPQPPQQPQ ATVKLENGGS
201: TGGVKLEPQM GQPDQNSSAQ MMRHASNVKI EPQQLQALRS LSAVKMEQPT SDPSAFLQQQ QQQQHLLQLT KQNPQAAAAA QLNLLQQQRI LQMQQQQQQQ
301: QQQILKNLPL QRNQLQQQQL LRQQSLNMRT PGKSAPYEPG TCAKRLTHYM YHQQNRPQDN NIEYWRNFVN EYFSPNAKKR WCVSLYGSGR QTTGVFPQDV
401: WHCEICNRKP GRGFETTVEV LPRLCQIKYA SGTLEELLYV DMPRESQNAS GQIVLDYTKA IQESVFEQLR VVREGHLRIV FNPDLKIASW EFCARRHEEL
501: IPRRSIIPQV SQLGAVVQKY QSAVQNSTNL STQDMQNNCN SFVACARQLA KALEVPLVND LGYTKRYVRC LQIAEVVNCM KDLIDYSRQN GSGPIASLHS
601: FPRRTSSGVS PHQSQQQQPE EQQSIPQSSN QSGQNAAPMT GVQASASANA DVTSNNSLSC APSTSAPSPS VVGLLQGSMN SRQDHPMSSA NGPYTSGNSA
701: AIPKVNSTTS LQSNPSTSFP SPMPTTSNNN MMPAPQSTNQ LSSPTTSSNL PPMQPPATRP QEPEPNESQS SVQRILQDLM MSPQMNGIGQ LGNDMKRPNG
801: LTSSVNGVNC LVGNAVTNNS GMGGMGFGAM GGLGPNHAAS GLRTAMVNNA MAISGRMGMN HSAHDLSQLG QLQQQQQHQQ QQQQQQHDLG NQLLNGLRAA
901: NSFNNLQYDW KPSQ
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.