CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX95960
CDY04265
CDY07357
CDY33554
CDY65811

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43850.1	CDX95960	AT1G69120.1	16854969
AT1G43850.1	CDY04265	AT1G69120.1	16854969
AT1G43850.1	CDY07357	AT1G69120.1	16854969
AT1G43850.1	CDY33554	AT1G69120.1	16854969
AT1G43850.1	CDY65811	AT1G69120.1	16854969

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69476	Canola	nucleus	29.58	30.77
CDY14963	Canola	nucleus, plastid	76.76	29.54
CDY40943	Canola	nucleus, plastid	53.17	19.51
AT1G43850.1	Thale cress	nucleus, plastid	57.39	18.59
KRH15928	Soybean	nucleus, plastid	43.31	13.44
KRH64564	Soybean	nucleus, plastid	42.61	13.28
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	41.9	13.03
KRH18102	Soybean	plastid	41.55	12.72
Solyc06g059750.2.1	Tomato	nucleus, plastid	36.97	12.53
KRH53367	Soybean	nucleus	42.25	12.49
GSMUA_Achr2P20700_001	Banana	plastid	37.32	12.37
Solyc06g059760.2.1	Tomato	nucleus, plastid	39.08	12.36
GSMUA_Achr10P...	Banana	nucleus, plastid	37.68	12.17
Os11t0207000-01	Rice	nucleus, plastid	38.73	12.04
GSMUA_Achr6P18610_001	Banana	plastid	36.97	11.99
Zm00001d007295_P003	Maize	nucleus, plastid	37.68	11.69
Os11t0207100-01	Rice	nucleus	38.38	11.68
KXG28056	Sorghum	nucleus, plastid	38.03	11.51
GSMUA_Achr3P02850_001	Banana	nucleus	36.27	11.5
TraesCS4A01G211700.2	Wheat	nucleus, plastid	37.68	11.47
TraesCS4B01G104400.2	Wheat	nucleus, plastid	37.68	11.46
TraesCS4D01G101500.1	Wheat	nucleus, plastid	36.62	11.45
TraesCS4D01G101700.1	Wheat	nucleus, plastid	37.68	11.43
TraesCS4A01G211800.1	Wheat	nucleus, plastid	36.62	11.43
TraesCS4B01G104300.1	Wheat	nucleus, plastid	36.62	11.4
HORVU4Hr1G017140.2	Barley	plastid	37.32	11.3
HORVU4Hr1G017160.3	Barley	nucleus, plastid	36.62	11.28
Zm00001d049125_P002	Maize	nucleus, plastid	36.62	11.18
Zm00001d023706_P002	Maize	nucleus	34.51	10.8
Zm00001d041803_P001	Maize	nucleus	34.51	10.7
KXG23150	Sorghum	nucleus	34.86	10.68
CDX89417	Canola	nucleus	14.44	10.65
CDY57709	Canola	nucleus, plastid	15.85	9.15
CDY50201	Canola	nucleus, plastid	21.13	8.8
CDX92713	Canola	nucleus, plastid	21.13	8.73
CDY52362	Canola	nucleus	20.77	8.58
CDY54085	Canola	nucleus, plastid	20.77	8.37
PGSC0003DMT400092079	Potato	nucleus	20.77	7.98
GSMUA_Achr5P25900_001	Banana	nucleus	26.76	7.92
CDY30691	Canola	nucleus	19.72	7.39
CDX92714	Canola	cytosol	13.73	7.33
CDY67669	Canola	mitochondrion, nucleus	1.06	1.26

Protein Annotations

EnsemblPlants:CDY70167	EnsemblPlantsGene:GSBRNA2T00096840001	GO:A0A078JX20	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0055114	InterPro:ADH_Zn_CS
InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF16	PFAM:PF01803	ProteinID:CDY70167	ProteinID:CDY70167.1
ScanProsite:PS00059	SEG:seg	UniParc:UPI0004EE9A24	UniProt:A0A078JX20	MapMan:35.1	:

Description

BnaAnng32790DBnaAnng32790D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JX20]

Coordinates

chrLK041359:+:105..1790

Molecular Weight (calculated)

30224.7 Da

IEP (calculated)

8.666

GRAVY (calculated)

-0.756

Length

284 amino acids

Sequence
(BLAST)

001: FVASARQLAK ALEVPLVNDL GYTKRYVRCL QISEVVNSMK DLIDYSRETR TGPIESLAKF PRRTGPSAAL PGPSAQQPNE QPRQQQQQQQ SIAQIANNDQ
101: SCGQSSLNYA FNTASASTST GSIAGLIHQN SMKQRNQNAA YKTPSSPYGG NSFQMQSPSN SGTMAPSSQQ QQHNLPSFQS PTSSSNNNYP SQNGITSINN
201: HMGSTNLPAI QQAAAAADEA NESSSVQKIL NEILMNNNQA HNTSGGGGHE SFGNDGKAGS NVNSSGVLMM NNGQVNTSIG GRWE

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.