Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 2
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P02850_001 | Banana | nucleus | 71.3 | 68.19 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 68.14 | 66.44 |
| CDY67669 | Canola | mitochondrion, nucleus | 16.34 | 58.82 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 55.31 | 51.92 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 52.28 | 51.14 |
| KRH64564 | Soybean | nucleus, plastid | 53.91 | 50.71 |
| KRH15928 | Soybean | nucleus, plastid | 53.21 | 49.84 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 47.96 | 49.05 |
| KRH18102 | Soybean | plastid | 52.39 | 48.38 |
| KRH53367 | Soybean | nucleus | 53.91 | 48.07 |
| CDY14963 | Canola | nucleus, plastid | 41.19 | 47.83 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 49.94 | 47.66 |
| CDY40943 | Canola | nucleus, plastid | 42.71 | 47.29 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 40.84 | 47.17 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 42.12 | 46.64 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 45.97 | 45.18 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 45.74 | 44.7 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 12.37 | 37.32 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 40.61 | 36.25 |
| GSMUA_Achr10P... | Banana | nucleus | 26.49 | 29.29 |
| GSMUA_Achr1P16220_001 | Banana | nucleus | 23.8 | 29.18 |
| GSMUA_Achr1P07930_001 | Banana | nucleus | 26.6 | 28.72 |
| GSMUA_Achr2P03310_001 | Banana | nucleus | 25.2 | 26.77 |
| GSMUA_Achr7P05870_001 | Banana | nucleus | 8.28 | 24.83 |
| CDY69476 | Canola | nucleus | 7.0 | 21.98 |
| PGSC0003DMT400092079 | Potato | nucleus | 18.32 | 21.24 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P20700_001 | EnsemblPlants:GSMUA_Achr2T20700_001 | EnsemblPlantsGene:GSMUA_Achr2G20700_001 | InterPro:LIM-bd/SEUSS | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF17 |
| PFAM:PF01803 | SEG:seg | UniParc:UPI00029497AC | UniProt:M0S9R1 | MapMan:35.1 | : |
Description
Transcriptional corepressor SEUSS [Source:GMGC_GENE;Acc:GSMUA_Achr2G20700_001]
Coordinates
chr2:-:20465494..20473126
Molecular Weight (calculated)
92886.0 Da
IEP (calculated)
8.215
GRAVY (calculated)
-0.533
Length
857 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPSGSSNPI GGSQSVNPSL LRSNSGLLGG SQPGSIPSQT PFSSLVSPRT QFNGNSLLGN ISNVSALNNS FGNGGTVSGL SMPMNLQQRG GLGGAVDTVS
101: SEPNPLSSFT SSSGQNQGQQ QQCFQNPSGS QLGPDQAQSQ IDAVQNFQQQ FSVPQSQQQQ QQQQQLLLLR GGFSNVGHMG PVKLEPQIGP SNQIGPSQQL
201: QMLRGTNAVK MEPQQLQSFR SMGPVKMETQ HSDPSLFLQQ QQQQQQQQQI LQLSRQNSQV AAAQMNILQQ QRMLQSQLQQ QLLQHNVPVR PPMRSTTYEP
301: GMCARRLTQY MCHQQHRPQD NNIEFWRKFI AEYFAPNAKK RWCVSLYGSG RQTTGVFPQD VWHCEICNHK PGRGFETTVE VLPRLFQIKY ASGTLEELLY
401: VDMPREYQNA SGQIVLDYAK AIQESVFEQL RVVRDGQLRI VFNPDLKISS WEFCARRHEE LIPRRAITPQ VSQLGVVVQR YQAAAQNASS GLSTQDLQNT
501: CNSFVASARQ LAKALEVPLV NDLGYTKRYV RCLQISEVVN SMKDLIDYSK QTEAGPIDCL INFPRRTSTS SGLQAEQAQQ PDQQQPITQN SNHNDQGSIH
601: APNVPLSAGS NNVVGVDNSL NAASSTSAST IIGILHQNST NTRQENQMNI ANSPFGGNNV QIPSSSSSNS LAPTQSNPPL KPASGDNPTA TSHNATYLSS
701: TNSSASLSTM QQPVAQLHET DPSDSQSSVQ KILQELMSSQ LNGVSSLGNE TKMISGVTPA LSGGNCLVGN GISNDSAISG TGFTGLGGIG LSGAASGMRA
801: AMTNNAMAMN GRIGMNHFSQ DPTAINRQQQ DIGNRLLDRL GAVTNFNNLQ FDWKSSP
101: SEPNPLSSFT SSSGQNQGQQ QQCFQNPSGS QLGPDQAQSQ IDAVQNFQQQ FSVPQSQQQQ QQQQQLLLLR GGFSNVGHMG PVKLEPQIGP SNQIGPSQQL
201: QMLRGTNAVK MEPQQLQSFR SMGPVKMETQ HSDPSLFLQQ QQQQQQQQQI LQLSRQNSQV AAAQMNILQQ QRMLQSQLQQ QLLQHNVPVR PPMRSTTYEP
301: GMCARRLTQY MCHQQHRPQD NNIEFWRKFI AEYFAPNAKK RWCVSLYGSG RQTTGVFPQD VWHCEICNHK PGRGFETTVE VLPRLFQIKY ASGTLEELLY
401: VDMPREYQNA SGQIVLDYAK AIQESVFEQL RVVRDGQLRI VFNPDLKISS WEFCARRHEE LIPRRAITPQ VSQLGVVVQR YQAAAQNASS GLSTQDLQNT
501: CNSFVASARQ LAKALEVPLV NDLGYTKRYV RCLQISEVVN SMKDLIDYSK QTEAGPIDCL INFPRRTSTS SGLQAEQAQQ PDQQQPITQN SNHNDQGSIH
601: APNVPLSAGS NNVVGVDNSL NAASSTSAST IIGILHQNST NTRQENQMNI ANSPFGGNNV QIPSSSSSNS LAPTQSNPPL KPASGDNPTA TSHNATYLSS
701: TNSSASLSTM QQPVAQLHET DPSDSQSSVQ KILQELMSSQ LNGVSSLGNE TKMISGVTPA LSGGNCLVGN GISNDSAISG TGFTGLGGIG LSGAASGMRA
801: AMTNNAMAMN GRIGMNHFSQ DPTAINRQQQ DIGNRLLDRL GAVTNFNNLQ FDWKSSP
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.