CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07467
KRH45412
KRH70974

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43850.1	KRH07467	AT1G69120.1	16854969
AT1G43850.1	KRH45412	AT1G69120.1	16854969
AT1G43850.1	KRH70974	AT1G69120.1	16854969

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15928	Soybean	nucleus, plastid	80.6	81.75
KRH64564	Soybean	nucleus, plastid	71.44	72.78
KRH53367	Soybean	nucleus	70.69	68.26
CDY67669	Canola	mitochondrion, nucleus	17.46	68.07
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	66.59	67.69
Solyc06g059760.2.1	Tomato	nucleus, plastid	58.84	60.8
Solyc06g059750.2.1	Tomato	nucleus, plastid	53.66	59.43
CDY40943	Canola	nucleus, plastid	46.77	56.07
Bra032192.1-P	Field mustard	nucleus, plastid	46.34	55.56
GSMUA_Achr10P...	Banana	nucleus, plastid	52.59	55.52
Bra036931.1-P	Field mustard	nucleus, plastid	42.78	53.5
CDY14963	Canola	nucleus, plastid	42.03	52.85
GSMUA_Achr2P20700_001	Banana	plastid	48.38	52.39
AT1G43850.1	Thale cress	nucleus, plastid	49.25	52.11
GSMUA_Achr6P18610_001	Banana	plastid	49.14	52.05
Os11t0207000-01	Rice	nucleus, plastid	48.71	49.45
TraesCS4A01G211800.1	Wheat	nucleus, plastid	48.38	49.34
TraesCS4D01G101500.1	Wheat	nucleus, plastid	48.28	49.34
GSMUA_Achr3P02850_001	Banana	nucleus	47.41	49.11
Os11t0207100-01	Rice	nucleus	49.14	48.87
HORVU4Hr1G017160.3	Barley	nucleus, plastid	48.49	48.81
TraesCS4B01G104300.1	Wheat	nucleus, plastid	47.95	48.79
TraesCS4B01G104400.2	Wheat	nucleus, plastid	48.81	48.5
TraesCS4A01G211700.2	Wheat	nucleus, plastid	48.49	48.23
TraesCS4D01G101700.1	Wheat	nucleus, plastid	48.6	48.18
Zm00001d023706_P002	Maize	nucleus	47.09	48.18
Zm00001d007295_P003	Maize	nucleus, plastid	47.41	48.09
KXG28056	Sorghum	nucleus, plastid	48.38	47.87
HORVU4Hr1G017140.2	Barley	plastid	48.38	47.87
KXG23150	Sorghum	nucleus	47.63	47.68
Zm00001d041803_P001	Maize	nucleus	46.66	47.27
Zm00001d049125_P002	Maize	nucleus, plastid	47.31	47.2
CDY70167	Canola	cytosol, mitochondrion, nucleus	12.72	41.55
KRG88471	Soybean	nucleus, plastid	18.1	39.25
GSMUA_Achr5P25900_001	Banana	nucleus	37.28	36.04
KRH38603	Soybean	plastid	18.97	33.15
KRH38604	Soybean	nucleus	28.56	32.8
KRH09131	Soybean	nucleus, plastid	29.53	31.53
KRH09132	Soybean	plastid	29.42	31.06
PGSC0003DMT400092079	Potato	nucleus	18.32	23.0
CDY69476	Canola	nucleus	6.57	22.34

Protein Annotations

EMBL:ACUP02008030	EnsemblPlants:KRH18102	EnsemblPlantsGene:GLYMA_13G037600	EntrezGene:100787437	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF17	PFAM:PF01803	ProteinID:KRH18102
ProteinID:KRH18102.1	SEG:seg	UniParc:UPI000233B91E	UniProt:I1LXA8	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr13:-:11706789..11719329

Molecular Weight (calculated)

100703.0 Da

IEP (calculated)

9.100

GRAVY (calculated)

-0.664

Length

928 amino acids

Sequence
(BLAST)

001: MVPPGPPTPI GGAQSVPLSL LRSNSGMLAG QGGGAVPSQT SFPSLVGQRN QFNNMNMLGN MSNVTSLLNQ SFPNGIPNSG LGGPGSSQRS GGIDAGAEAD
101: PLSGVGNGMN FGNQLQSNLM NPGSSGQGQG PQFSNASGSQ MLQDQQHSQQ LPQNFQQHSQ PSMQQFSGPL NAQQQQQQQQ HFQSIRGGMG GVGQVKLEPQ
201: VNIDQFGQQQ QLPSRNLAQV KLEPQQLQTL RNMAPVKMEP QHNDQQFLHQ QQQQQQQQQQ QQQQQQLLHM SRQSSQAAAA QMNHLLQQQR LLQYQQHQQQ
301: QQQLLKAMPQ QRSQLPQQFQ QQNMPMRSPV KPAYEPGMCA RRLTHYMYQQ QHRPDDNNIE FWRKFVSEYF APNAKKKWCV SMYGNGRQTT GVFPQDVWHC
401: EICNRKPGRG FEATAEVLPR LFKIKYESGT LEELLYVDMP REYHNSSGQI VLDYAKAIQE SVFEQLRVVR DGQLRIVFSP DLKICSWEFC ARRHEELIPR
501: RLLIPQVSQL GAVAQKYQAI TQNATPNLSV PELQNNCNMV VASARQLAKA LEVPLVNDLG YTKRYVRCLQ ISEVVNSMKD LIDYSRETGT GPMDSLAKFP
601: RRTSGSSGLH SQGQQSEDQL QQQSQPQLPP QHMVPHSSNG DQNSVQTAAM QIASSNGVTS VNNSVNAASA STSTSTIVGL LHQNSMNSRQ NSMNSRQNSM
701: NNASSPYGGS SVQIASPGSS GNMPQAQPNA SPFQSPTPSS SNIPQTSHPA LTSANHMGTA NSPANISLQQ QQQTSLPAEA DPSDAQSSVQ KIIHEMMMSS
801: QMNGPGGMAG AGSLGNDMKN VNGILPGSNN TGLNSGSVSG LVGNVAVNSN SGVGVGGYGT IGLGPAGMTN GMRPVMGHNS IMNGRGGMAS LARDQVMNHQ
901: QDLSSQLLSG LGGVNGFSNL QFDWKPSP

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.