CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22042
KRH22283
KRH22725
KRH25168
KRH26232
KRH26581
KRH27047
KRH27280
KRH30513
KRH55187
KRH61471

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	KRH22725	AT3G44720.1	21798944
AT5G62090.1	KRH25168	AT3G44720.1	21798944
AT5G62090.1	KRH26581	AT3G44720.1	21798944
AT5G62090.1	KRH30513	AT3G44720.1	21798944
AT5G62090.1	KRH22283	AT3G58630.1	21798944
AT5G62090.1	KRH27047	AT3G58630.1	21798944
AT5G62090.1	KRH61471	AT4G08150.1	21798944
AT5G62090.1	KRH22042	AT5G53950.1	21798944
AT5G62090.1	KRH26232	AT5G53950.1	21798944
AT5G62090.1	KRH27280	AT5G53950.1	21798944
AT5G62090.1	KRH55187	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88471	Soybean	nucleus, plastid	43.96	89.25
KRH38604	Soybean	nucleus	81.01	87.13
KRH38603	Soybean	plastid	52.36	85.69
KRH09132	Soybean	plastid	86.31	85.32
Solyc03g026190.2.1	Tomato	plastid	49.6	76.42
VIT_16s0100g00500.t01	Wine grape	plastid	71.23	71.64
PGSC0003DMT400037024	Potato	plastid	61.33	58.19
AT5G62090.1	Thale cress	nucleus	50.06	53.31
CDY50201	Canola	nucleus, plastid	41.08	52.35
Bra019159.1-P	Field mustard	nucleus, plastid	41.08	52.35
CDY30691	Canola	nucleus	45.45	52.11
CDY52362	Canola	nucleus	40.97	51.74
CDY54085	Canola	nucleus, plastid	41.77	51.49
AT4G25515.1	Thale cress	nucleus, plastid	40.51	51.39
CDX89417	Canola	nucleus	22.67	51.17
CDX92713	Canola	nucleus, plastid	40.28	50.95
GSMUA_Achr1P16220_001	Banana	nucleus	40.85	50.79
GSMUA_Achr7P05870_001	Banana	nucleus	16.34	49.65
Bra029289.1-P	Field mustard	nucleus	37.4	49.17
CDY57709	Canola	nucleus, plastid	27.39	48.37
GSMUA_Achr10P...	Banana	nucleus	42.23	47.35
AT4G25520.1	Thale cress	plastid	40.74	47.33
Bra010458.1-P	Field mustard	nucleus, plastid	32.11	46.27
CDX92714	Canola	cytosol	27.96	45.68
GSMUA_Achr1P07930_001	Banana	nucleus	41.54	45.47
Bra013897.1-P	Field mustard	nucleus	20.83	45.36
GSMUA_Achr2P03310_001	Banana	nucleus	38.32	41.26
KXG19170	Sorghum	plastid	36.82	40.97
Zm00001d045516_P006	Maize	nucleus, plastid	36.36	40.77
KXG34470	Sorghum	nucleus, plastid	34.52	40.65
Zm00001d035990_P002	Maize	plastid	36.36	40.51
Os06t0126000-02	Rice	cytosol, nucleus	37.28	39.42
TraesCS7B01G437100.1	Wheat	plastid	36.36	39.16
TraesCS7A01G520700.1	Wheat	nucleus	35.9	38.66
HORVU7Hr1G115870.4	Barley	plastid	34.87	37.64
Zm00001d018890_P006	Maize	nucleus, plastid	32.57	37.58
TraesCS7D01G510400.2	Wheat	nucleus	36.13	36.13
TraesCS7D01G146100.2	Wheat	nucleus, plastid	34.52	35.63
TraesCS7A01G144600.3	Wheat	nucleus, plastid	34.52	35.09
TraesCS7B01G047100.4	Wheat	plastid	34.06	34.78
HORVU7Hr1G010050.2	Barley	nucleus, plastid	34.98	34.74
TraesCS7D01G050000.5	Wheat	nucleus, plastid	33.83	34.31
HORVU7Hr1G029650.10	Barley	plastid	34.29	34.1
TraesCS4A01G441500.1	Wheat	nucleus, plastid	33.72	33.95
TraesCS7A01G054900.2	Wheat	nucleus, plastid	33.72	33.41
KRH18102	Soybean	plastid	31.53	29.53
KRH64564	Soybean	nucleus, plastid	30.73	29.31
KRH15928	Soybean	nucleus, plastid	29.92	28.42
KRH53367	Soybean	nucleus	30.96	27.99

Protein Annotations

EMBL:ACUP02010271	EnsemblPlants:KRH09131	EnsemblPlantsGene:GLYMA_16G198200	EntrezGene:100816886	InterPro:LIM-bd/SEUSS	ncoils:Coil
PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803	ProteinID:KRH09131	ProteinID:KRH09131.1	SEG:seg
UniParc:UPI000233AF05	UniProt:I1MQ14	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:35912251..35919151

Molecular Weight (calculated)

95170.0 Da

IEP (calculated)

9.254

GRAVY (calculated)

-0.626

Length

869 amino acids

Sequence
(BLAST)

001: MPPMTPSRVA GGLAQSSSHS GIFFQGDGQS QNVVNSDLSS SFVNSSSTVP GAGRSNLGPV SGGMNNAVLN SVPNSAPSVG ASSLVTDANS ALSGGPHLQR
101: SASVNTDSYL RLPASPMSFT SNNISISGSS VMDGSSVVQQ SSHQDQNVQQ LQQNQQQPQG ASSATSLPAS QTGLSPLQMG AQVPGSFIQD PNNMSHLSKK
201: PRMDIKQEDV MQQQVIQQIL QRQDSMQFQG RNPQLQALLQ QQQRLRQQQI FQSMPQLQRA HLQQQQQQQQ QQQHQQQQMQ LRQQLQQQVM QPSSAGKRPY
301: DSGVSGVCAR RLMQYLYHQR QRPNDNSIAY WRKFVAEYYS PRAKKRWCLS LYSNVGHHAL GVFPQAAMDA WQCDMCGSKS GRGFEATYEV LPRLNEIKFG
401: SGVIDELLFL DLPRETRFPS GVMMLEYAKA IQESVYEQLR VVREGQLRII FTQDLKILSW EFCARRHEEL LPRRLVAPQV NQLVQVAQKC QSTIAESGAD
501: GVSQQDLQTN SNMVLTAGRQ LAKILELQSL NDLGFSKRYV RCLQISEVVN SMKDLIDICS EHKIGAIESL KNYPRLATAS KGQMQKMQEM EQLANVQGLP
601: TDRNTLNKLM TLNPGLNNHM NNTNNMVGRG ALSGSAQAAL ALNNYQNLLM RQNSMNSSPG SLQREGSSFN NSNPSPSSAL QGTGPALIPG SMQNSPVGGF
701: PSPHLTPQQQ QQQLLQQRTL SANGLLQQNH SQGSQGNQAL QQQQMIQQLL QEMSNNNGGL QSQSLGGHNA NGNISKNTMG FGGHTPSLSG GSANVPGNNR
801: PISRNNSFKT ASNSDSSAAG GNNGFNQRTS DMQQNLHLQD VAQDIGNEFL DNPFFNSDLD DNMGFSWKA

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.