CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019159.1-P	Field mustard	nucleus, plastid	100.0	100.0
CDX92713	Canola	nucleus, plastid	86.66	86.03
CDY52362	Canola	nucleus	71.11	70.49
CDY54085	Canola	nucleus, plastid	72.43	70.07
AT4G25515.1	Thale cress	nucleus, plastid	70.09	69.78
CDX89417	Canola	nucleus	37.39	66.23
CDY57709	Canola	nucleus, plastid	44.13	61.18
AT4G25520.1	Thale cress	plastid	65.54	59.76
CDX92714	Canola	cytosol	40.76	52.26
KRG88471	Soybean	nucleus, plastid	32.11	51.17
Solyc03g026190.2.1	Tomato	plastid	39.0	47.16
KRH38603	Soybean	plastid	34.02	43.69
KRH38604	Soybean	nucleus	49.41	41.71
KRH09131	Soybean	nucleus, plastid	52.35	41.08
VIT_16s0100g00500.t01	Wine grape	plastid	51.32	40.51
CDY30691	Canola	nucleus	44.57	40.11
KRH09132	Soybean	plastid	50.0	38.79
CDY67669	Canola	mitochondrion, nucleus	13.49	38.66
GSMUA_Achr1P16220_001	Banana	nucleus	37.54	36.62
PGSC0003DMT400037024	Potato	plastid	48.39	36.03
GSMUA_Achr1P07930_001	Banana	nucleus	40.03	34.38
GSMUA_Achr10P...	Banana	nucleus	38.42	33.81
KXG34470	Sorghum	nucleus, plastid	36.36	33.6
KXG19170	Sorghum	plastid	36.8	32.14
Zm00001d035990_P002	Maize	plastid	36.22	31.67
Zm00001d045516_P006	Maize	nucleus, plastid	35.48	31.23
Zm00001d018890_P006	Maize	nucleus, plastid	34.46	31.21
GSMUA_Achr7P05870_001	Banana	nucleus	13.05	31.12
Os06t0126000-02	Rice	cytosol, nucleus	37.24	30.9
TraesCS7B01G437100.1	Wheat	plastid	36.07	30.48
TraesCS7A01G520700.1	Wheat	nucleus	36.07	30.48
GSMUA_Achr2P03310_001	Banana	nucleus	34.9	29.49
HORVU7Hr1G115870.4	Barley	plastid	34.16	28.94
TraesCS7D01G510400.2	Wheat	nucleus	36.22	28.42
TraesCS7D01G146100.2	Wheat	nucleus, plastid	34.75	28.15
HORVU7Hr1G010050.2	Barley	nucleus, plastid	35.78	27.89
TraesCS7D01G050000.5	Wheat	nucleus, plastid	34.75	27.65
TraesCS7B01G047100.4	Wheat	plastid	34.46	27.61
TraesCS7A01G144600.3	Wheat	nucleus, plastid	34.6	27.6
HORVU7Hr1G029650.10	Barley	plastid	35.34	27.57
TraesCS4A01G441500.1	Wheat	nucleus, plastid	34.6	27.35
TraesCS7A01G054900.2	Wheat	nucleus, plastid	34.75	27.02
CDY14963	Canola	nucleus, plastid	28.59	26.42
CDY40943	Canola	nucleus, plastid	28.45	25.06
CDY70167	Canola	cytosol, mitochondrion, nucleus	8.8	21.13
CDY69476	Canola	nucleus	4.84	12.09

Protein Annotations

EnsemblPlants:CDY50201	EnsemblPlantsGene:GSBRNA2T00096136001	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803
ProteinID:CDY50201	ProteinID:CDY50201.1	SEG:seg	UniParc:UPI00025410D9	UniProt:A0A078IJM7	MapMan:35.1

Description

BnaA03g47470DBnaA03g47470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJM7]

Coordinates

chrLK032888:-:93190..96824

Molecular Weight (calculated)

76065.4 Da

IEP (calculated)

9.492

GRAVY (calculated)

-0.644

Length

682 amino acids

Sequence
(BLAST)

001: MNKATVSGAI ESSFSLTDAL TMQRNGGISN PRVPTSPMSF SNNINVPGSL VLDGSASMQQ GGQGSVPVRE NSYLHVDKKP KLEVKQEDML QQQVLQQYIQ
101: RQDPTGRNPQ LQALLHQQRM RQQQQQILQS MSPSQRLQLQ QQQQLLRQQQ GAQQIPPSVR PFEPGVCARK LMMYLYHLQQ RPAENCITYW RKFVAEYFSP
201: RAKQRLCLSQ YESAGHHALG MVSQAAPDMW QCDLCGTKSG KGFEATFDVL ARLNEIKFAS GIIDEFLYLD LPRENRFSNG LMMLEYRKAV QETVHEQFRV
301: IREGHLRIIF SQDLKILSWE FCARRHEELL LRRLIAPQVN QLLQVALKCQ STISESGSDG VSKQDLQSNS NMVLGAGRQL AKFMELQSLN DLGYPKRYIR
401: TLQISEVVKS MKDLMNFTGD HKIGPIEGLK RLFEQTATVK LQRQKEMEQL GNSGAIMNAS SQAQMALTQG TMNGLTGNNN NHPQIVGRGA MNGSAQAAAA
501: LTNYQSMLMR QNAMNNPNSK QEGFSSQSQS PSSSSHQRQN LATGGFPSSP QMQQRTMNGA PNTLQQNPPH RLLQPPHSHG TNQEQQMLHQ MLQQMSENGA
601: NVQQQQAFSG QSGGNSNAER NPTASTSNIS GGGGVRVPSR NNSFKSASNS NLHLTEDIPI TELPHDFSAD DFFNNSDIYG SL

Best Arabidopsis Sequence Match ( AT4G25520.1 )
(BLAST)

001: MNRTVVSGAV ESSFSLTDAV GTEALNMQRS SGINNNMRIP TSPMSFSSNS VNIPGSLVLD GSAASMQHLP QQQQQQLLQQ QTGQGSVPMR ENNYSHVDKK
101: PRLEVKQEDM LQQQILQQLI QRQDPTGRNP QMQALLQQQR LRQHQQMLQS MSPSQRLQLQ QQQQLRQQLQ QQGTQQIPPN VRPYEVGVCA RKLMMYLYHL
201: QQRPAENCIT YWRKFVAEYF SPRAKQRLCL SQYESAGHHA LGMFPQAAPD MWQCDLCGTK SGKGFEATFD VLARLIEIKF ASGIIDELLY LDHPRENRFP
301: NGLMMLEYRK AVQETVHEQF RVVREGHLRI IFSQDLKILS WEFCARRHEE LLLRRLIAPQ VNQLLQVAQK CQSTISESGS EGVSQQDLQS NSNMVLGAGR
401: QLAKFMELQS LNDLGYPKRY IRTLQISEVV KSMKDLMNFT GEQKIGPIEG LKRLLEQTVT VKLQKQKMQE MEQFGNNGAI NGPVQAQMVL TSGTMNGSTG
501: NNTNNHHQIV GRGAMSGPAE GQMVISSGTV SGATANNNSN NHNQIVGRGA MNGSAQAAAA LTNYQSMLMR QNAMNNPNSN TGKQEGFSSQ NPTPNSNQSP
601: SSSSQQRHNL VTGGFPNSPQ MQQQQRTMNG PTNILPQNHP HQLQSPHSHG NTPEQQMLHQ LLQEMSENGG SVQQQQAFSG QSGSNSNAER NTTASTSNIS
701: GGGRAPSRNN SFKAASNNNL HFSEDISITD HDFSEDGFFN NNDIYGGL

Arabidopsis Description

SLK1Probable transcriptional regulator SLK1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVM7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.