CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57709	Canola	nucleus, plastid	43.42	46.95
CDY52362	Canola	nucleus	54.14	41.86
CDY54085	Canola	nucleus, plastid	54.32	40.99
CDX89417	Canola	nucleus	29.51	40.78
CDY50201	Canola	nucleus, plastid	52.26	40.76
CDX92713	Canola	nucleus, plastid	52.07	40.32
AT4G25515.1	Thale cress	nucleus, plastid	51.13	39.71
KRG88471	Soybean	nucleus, plastid	31.58	39.25
AT4G25520.1	Thale cress	plastid	51.5	36.63
Solyc03g026190.2.1	Tomato	plastid	37.03	34.93
CDY67669	Canola	mitochondrion, nucleus	15.04	33.61
KRH38603	Soybean	plastid	30.64	30.7
CDY30691	Canola	nucleus	41.92	29.42
GSMUA_Achr1P16220_001	Banana	nucleus	36.84	28.04
KRH09131	Soybean	nucleus, plastid	45.68	27.96
KRH38604	Soybean	nucleus	42.29	27.85
GSMUA_Achr1P07930_001	Banana	nucleus	40.6	27.2
VIT_16s0100g00500.t01	Wine grape	plastid	43.8	26.97
KRH09132	Soybean	plastid	44.55	26.96
GSMUA_Achr10P...	Banana	nucleus	39.1	26.84
PGSC0003DMT400037024	Potato	plastid	43.8	25.44
KXG34470	Sorghum	nucleus, plastid	34.4	24.8
Zm00001d018890_P006	Maize	nucleus, plastid	34.4	24.3
KXG19170	Sorghum	plastid	34.4	23.43
Zm00001d045516_P006	Maize	nucleus, plastid	32.71	22.45
GSMUA_Achr2P03310_001	Banana	nucleus	34.02	22.43
Os06t0126000-02	Rice	cytosol, nucleus	34.59	22.38
Zm00001d035990_P002	Maize	plastid	32.52	22.18
TraesCS7A01G520700.1	Wheat	nucleus	33.46	22.06
TraesCS7B01G437100.1	Wheat	plastid	33.27	21.93
TraesCS7D01G510400.2	Wheat	nucleus	33.65	20.6
CDY14963	Canola	nucleus, plastid	28.57	20.6
TraesCS7D01G146100.2	Wheat	nucleus, plastid	32.52	20.55
HORVU7Hr1G115870.4	Barley	plastid	31.02	20.5
TraesCS7B01G047100.4	Wheat	plastid	32.52	20.33
CDY40943	Canola	nucleus, plastid	29.51	20.28
TraesCS7A01G144600.3	Wheat	nucleus, plastid	32.52	20.23
HORVU7Hr1G010050.2	Barley	nucleus, plastid	33.27	20.23
TraesCS7D01G050000.5	Wheat	nucleus, plastid	32.33	20.07
TraesCS7A01G054900.2	Wheat	nucleus, plastid	32.14	19.5
TraesCS4A01G441500.1	Wheat	nucleus, plastid	31.58	19.47
HORVU7Hr1G029650.10	Barley	plastid	31.95	19.45
GSMUA_Achr7P05870_001	Banana	nucleus	8.83	16.43
CDY70167	Canola	cytosol, mitochondrion, nucleus	7.33	13.73
CDY69476	Canola	nucleus	4.51	8.79

Protein Annotations

EnsemblPlants:CDX92714	EnsemblPlantsGene:GSBRNA2T00154532001	InterPro:LIM-bd/SEUSS	ncoils:Coil	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12
PFAM:PF01803	ProteinID:CDX92714	ProteinID:CDX92714.1	SEG:seg	UniParc:UPI0004EE23A5	MapMan:35.1

Description

BnaC07g39720D

Coordinates

chrLK031873:-:471595..473972

Molecular Weight (calculated)

61707.2 Da

IEP (calculated)

7.638

GRAVY (calculated)

-0.754

Length

532 amino acids

Sequence
(BLAST)

001: MGENHYYHAD KKKARLEEAE QDDMLHYNQY QDPTGGQDLQ LQAWTRQQNQ FLQSMTLPQQ QYIQHQDPTV RNPQLQALFL RHRLRQQQQQ QQQQLRRLLL
101: LQQQIPPNVC PFGGGMCAHR KFMMFLHHIK QRPEDNCITF WREFVAEYFS PRAKQRLCFS QYNGAGHMLG TLPQGMWQCN LCGTKSGKGF EATFDVLARL
201: FEIKFASGFV NELLSLEDPR ECRVPSGVIV LEYRKLVQTI EYEECRVVHE GPFRIIFSQD LKILRWEFCA RRHEEFLPRR LIAPKVNQLL QVAQKCTISE
301: SGSEGVAQQD LQTNSNMVLG AGRQLAKFME LQPLNDLGYP KRYFRALQTY EVVKSMKALM DFTENHNIGP IEGWKRLSEQ TETMRLQRQR MQEMEHLWNS
401: GAMNRSAQAQ MDGLTGNNNH HHSSAQAAAA LTNNQSMLMR LNAMNNPYSD TGAQEGFSSS QHPTPNLNQS PYWSHQRQNL ATGGFLSSPQ MQQQQQRTMH
501: GTLNTFQQTH FPEDATEIPV DFSDDNFNDS DK

Best Arabidopsis Sequence Match ( AT4G25515.1 )
(BLAST)

001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL

Arabidopsis Description

SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.