CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22042
KRH22283
KRH22725
KRH25168
KRH26232
KRH26581
KRH27047
KRH27280
KRH30513
KRH55187
KRH61471

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	KRH22725	AT3G44720.1	21798944
AT5G62090.1	KRH25168	AT3G44720.1	21798944
AT5G62090.1	KRH26581	AT3G44720.1	21798944
AT5G62090.1	KRH30513	AT3G44720.1	21798944
AT5G62090.1	KRH22283	AT3G58630.1	21798944
AT5G62090.1	KRH27047	AT3G58630.1	21798944
AT5G62090.1	KRH61471	AT4G08150.1	21798944
AT5G62090.1	KRH22042	AT5G53950.1	21798944
AT5G62090.1	KRH26232	AT5G53950.1	21798944
AT5G62090.1	KRH27280	AT5G53950.1	21798944
AT5G62090.1	KRH55187	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38604	Soybean	nucleus	84.41	91.83
KRH09131	Soybean	nucleus, plastid	85.32	86.31
KRG88471	Soybean	nucleus, plastid	41.52	85.28
KRH38603	Soybean	plastid	48.81	80.79
Solyc03g026190.2.1	Tomato	plastid	47.33	73.76
VIT_16s0100g00500.t01	Wine grape	plastid	67.8	68.98
PGSC0003DMT400037024	Potato	plastid	59.04	56.66
AT5G62090.1	Thale cress	nucleus	48.12	51.84
CDY30691	Canola	nucleus	43.57	50.53
GSMUA_Achr7P05870_001	Banana	nucleus	16.38	50.35
CDY50201	Canola	nucleus, plastid	38.79	50.0
CDY52362	Canola	nucleus	39.14	50.0
Bra019159.1-P	Field mustard	nucleus, plastid	38.79	50.0
GSMUA_Achr1P16220_001	Banana	nucleus	39.36	49.5
CDY54085	Canola	nucleus, plastid	39.59	49.36
AT4G25515.1	Thale cress	nucleus, plastid	38.45	49.34
CDX92713	Canola	nucleus, plastid	38.45	49.2
CDX89417	Canola	nucleus	21.39	48.83
CDY57709	Canola	nucleus, plastid	26.51	47.36
Bra029289.1-P	Field mustard	nucleus	35.27	46.9
GSMUA_Achr10P...	Banana	nucleus	39.82	45.16
Bra010458.1-P	Field mustard	nucleus, plastid	30.83	44.94
AT4G25520.1	Thale cress	plastid	38.11	44.79
CDX92714	Canola	cytosol	26.96	44.55
Bra013897.1-P	Field mustard	nucleus	19.68	43.36
GSMUA_Achr1P07930_001	Banana	nucleus	39.14	43.32
GSMUA_Achr2P03310_001	Banana	nucleus	37.32	40.64
KXG34470	Sorghum	nucleus, plastid	33.33	39.7
KXG19170	Sorghum	plastid	35.27	39.69
Zm00001d035990_P002	Maize	plastid	35.15	39.62
TraesCS7B01G437100.1	Wheat	plastid	35.49	38.66
Zm00001d045516_P006	Maize	nucleus, plastid	34.02	38.58
Os06t0126000-02	Rice	cytosol, nucleus	35.95	38.44
TraesCS7A01G520700.1	Wheat	nucleus	35.04	38.17
HORVU7Hr1G115870.4	Barley	plastid	33.67	36.77
Zm00001d018890_P006	Maize	nucleus, plastid	31.17	36.39
TraesCS7D01G510400.2	Wheat	nucleus	35.27	35.67
TraesCS7D01G146100.2	Wheat	nucleus, plastid	33.79	35.27
TraesCS7A01G144600.3	Wheat	nucleus, plastid	34.13	35.09
TraesCS7B01G047100.4	Wheat	plastid	33.9	35.02
TraesCS7D01G050000.5	Wheat	nucleus, plastid	33.9	34.77
TraesCS4A01G441500.1	Wheat	nucleus, plastid	33.79	34.41
HORVU7Hr1G010050.2	Barley	nucleus, plastid	34.24	34.4
HORVU7Hr1G029650.10	Barley	plastid	33.9	34.1
TraesCS7A01G054900.2	Wheat	nucleus, plastid	33.79	33.87
KRH18102	Soybean	plastid	31.06	29.42
KRH64564	Soybean	nucleus, plastid	30.38	29.31
KRH15928	Soybean	nucleus, plastid	29.81	28.63
KRH53367	Soybean	nucleus	30.49	27.89

Protein Annotations

EMBL:ACUP02010271	EnsemblPlants:KRH09132	EnsemblPlantsGene:GLYMA_16G198300	EntrezGene:547529	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:LIM-bd/SEUSS	ncoils:Coil	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803
ProteinID:KRH09132	ProteinID:KRH09132.1	ProteinID:KRH09133.1	SEG:seg	UniParc:UPI000233AF06	UniProt:I1MQ16
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:35920962..35928190

Molecular Weight (calculated)

96772.0 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.646

Length

879 amino acids

Sequence
(BLAST)

001: MTPLRVAGGL TQSSSNSGIF YQGDGQSQNV VNSHLSSSFV NSSSTVSGAS RSNLGPVSGD MNNAVLNSVA NSAPSVGASS LVTDANSALS GGPHLQRSAS
101: VNTDSYLRLP ASPMSFTSNN ISISGSSVMD VSSVVQQSSH QDQNVQQLQQ NQQQPQGASS AMSLSASQTG PSMLQMGAQI PGSFIQDPNN MSHLSKKPRM
201: DIKQEDMMQQ QVIQQILQRQ DSMQFQGRNP QLQAFLQQQQ QRLRQQQMFQ QMPQLHRAHL QQQQQQQQMQ LRQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ
301: QQVMQPSSVV KRPYDSSVSG VCARRLMQYL YHQRQRPNDN SIAYWRKFVA EYYSPRAKKR WCLSLYSNVG HHALGVFPQA SMDAWHCDIC GSKSGRGFEA
401: TYEVLPRLNE IKFGSGVIDE LLFLDMPREM RFASGAMMLE YGKAVQESVY EQLRVVREGQ LRIIFTQDLK ILSWEFCARC HEELLPRRLV APQVNQLVQV
501: AKKCQSTIAE SGSDGVSQQD IQTNSNMLLT AGGQLAKILE MQSLNELGFS KRYVRCLQIS EVVNSMKDLI DICADHKIGA IESLKNFPRL ATASKVQMQK
601: MQEMEQLANV QGLPTDRNTL NKLMALNPGL NNHINNPHNM VNRGALSGSA QAALALNNYQ NLLMRQNSMN SSPGSLQREG SSFNNSNQSP SSALQGAGPA
701: LIPGPMQNSS VSGFPSPRLP PQQQQHHLQQ PSLSANALLQ QNHSQGSQGN QALQQQMIHQ LLQEMSNNNG GVQPQSLGGP SANMAKNALG FGGHYPSLSG
801: GSANVTGNNG PMSRNNSFKT TANSDSSAAG GNNGLNQRTS EMPQNLHLQD VVQDIGNEFT DNPFLNSDLD DNMGFGWKA

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.