Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52362 | Canola | nucleus | 70.95 | 70.64 |
| CDY54085 | Canola | nucleus, plastid | 72.55 | 70.5 |
| Bra019159.1-P | Field mustard | nucleus, plastid | 69.78 | 70.09 |
| CDY50201 | Canola | nucleus, plastid | 69.78 | 70.09 |
| AT4G25520.1 | Thale cress | plastid | 73.43 | 67.25 |
| CDX92713 | Canola | nucleus, plastid | 67.3 | 67.1 |
| Bra010458.1-P | Field mustard | nucleus, plastid | 58.1 | 66.0 |
| KRG88471 | Soybean | nucleus, plastid | 32.41 | 51.87 |
| CDX92714 | Canola | cytosol | 39.71 | 51.13 |
| Solyc03g026190.2.1 | Tomato | plastid | 38.69 | 46.99 |
| KRH38603 | Soybean | plastid | 33.87 | 43.69 |
| KRH38604 | Soybean | nucleus | 48.91 | 41.46 |
| VIT_16s0100g00500.t01 | Wine grape | plastid | 51.24 | 40.62 |
| KRH09131 | Soybean | nucleus, plastid | 51.39 | 40.51 |
| AT5G62090.1 | Thale cress | nucleus | 46.13 | 38.73 |
| KRH09132 | Soybean | plastid | 49.34 | 38.45 |
| GSMUA_Achr1P16220_001 | Banana | nucleus | 37.52 | 36.77 |
| PGSC0003DMT400037024 | Potato | plastid | 48.47 | 36.24 |
| GSMUA_Achr1P07930_001 | Banana | nucleus | 40.15 | 34.63 |
| KXG34470 | Sorghum | nucleus, plastid | 36.79 | 34.15 |
| GSMUA_Achr10P... | Banana | nucleus | 37.81 | 33.42 |
| Zm00001d018890_P006 | Maize | nucleus, plastid | 35.47 | 32.27 |
| KXG19170 | Sorghum | plastid | 36.35 | 31.88 |
| TraesCS7B01G437100.1 | Wheat | plastid | 37.52 | 31.85 |
| GSMUA_Achr7P05870_001 | Banana | nucleus | 13.28 | 31.82 |
| Zm00001d035990_P002 | Maize | plastid | 36.2 | 31.79 |
| Zm00001d045516_P006 | Maize | nucleus, plastid | 35.91 | 31.74 |
| TraesCS7A01G520700.1 | Wheat | nucleus | 37.37 | 31.72 |
| Os06t0126000-02 | Rice | cytosol, nucleus | 37.66 | 31.39 |
| HORVU7Hr1G115870.4 | Barley | plastid | 35.04 | 29.81 |
| TraesCS7D01G510400.2 | Wheat | nucleus | 37.52 | 29.57 |
| GSMUA_Achr2P03310_001 | Banana | nucleus | 34.16 | 29.0 |
| TraesCS7D01G146100.2 | Wheat | nucleus, plastid | 34.74 | 28.27 |
| TraesCS7A01G144600.3 | Wheat | nucleus, plastid | 34.6 | 27.72 |
| TraesCS7D01G050000.5 | Wheat | nucleus, plastid | 34.6 | 27.65 |
| TraesCS7B01G047100.4 | Wheat | plastid | 34.31 | 27.61 |
| TraesCS4A01G441500.1 | Wheat | nucleus, plastid | 34.45 | 27.35 |
| HORVU7Hr1G010050.2 | Barley | nucleus, plastid | 34.89 | 27.31 |
| HORVU7Hr1G029650.10 | Barley | plastid | 34.6 | 27.12 |
| TraesCS7A01G054900.2 | Wheat | nucleus, plastid | 34.6 | 27.02 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 30.51 | 23.83 |
Protein Annotations
| MapMan:35.1 | EntrezGene:828656 | ProteinID:AEE85072.1 | ArrayExpress:AT4G25515 | EnsemblPlantsGene:AT4G25515 | RefSeq:AT4G25515 |
| TAIR:AT4G25515 | RefSeq:AT4G25515-TAIR-G | EnsemblPlants:AT4G25515.1 | TAIR:AT4G25515.1 | Unigene:At.20131 | ProteinID:CAA18172.1 |
| UniProt:F4JT98 | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:LIM-bd/SEUSS |
| RefSeq:NP_680741.5 | PFAM:PF01803 | PO:PO:0000293 | PO:PO:0009049 | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF12 |
| Symbol:SLK3 | UniParc:UPI0001A7B0EA | SEG:seg | : | : | : |
Description
SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
Coordinates
chr4:+:13028219..13031803
Molecular Weight (calculated)
77016.2 Da
IEP (calculated)
8.636
GRAVY (calculated)
-0.731
Length
685 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.