Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G144600.3 | Wheat | nucleus, plastid | 98.46 | 96.96 |
| TraesCS7D01G050000.5 | Wheat | nucleus, plastid | 94.66 | 93.0 |
| TraesCS7B01G047100.4 | Wheat | plastid | 93.35 | 92.36 |
| HORVU7Hr1G010050.2 | Barley | nucleus, plastid | 93.35 | 89.83 |
| HORVU7Hr1G029650.10 | Barley | plastid | 92.52 | 89.13 |
| TraesCS7D01G510400.2 | Wheat | nucleus | 72.45 | 70.2 |
| Os06t0126000-02 | Rice | cytosol, nucleus | 64.37 | 65.94 |
| KXG19170 | Sorghum | plastid | 56.41 | 60.82 |
| KXG34470 | Sorghum | nucleus, plastid | 52.61 | 60.03 |
| Zm00001d045516_P006 | Maize | nucleus, plastid | 54.63 | 59.35 |
| Zm00001d035990_P002 | Maize | plastid | 54.63 | 58.97 |
| Zm00001d018890_P006 | Maize | nucleus, plastid | 48.93 | 54.71 |
| GSMUA_Achr7P05870_001 | Banana | nucleus | 15.56 | 45.8 |
| Solyc03g026190.2.1 | Tomato | plastid | 28.74 | 42.91 |
| GSMUA_Achr1P16220_001 | Banana | nucleus | 34.56 | 41.63 |
| KRG88471 | Soybean | nucleus, plastid | 21.02 | 41.36 |
| KRH38603 | Soybean | plastid | 25.42 | 40.3 |
| GSMUA_Achr1P07930_001 | Banana | nucleus | 36.58 | 38.79 |
| GSMUA_Achr10P... | Banana | nucleus | 34.2 | 37.16 |
| KRH38604 | Soybean | nucleus | 35.39 | 36.88 |
| CDX92713 | Canola | nucleus, plastid | 29.57 | 36.24 |
| CDY57709 | Canola | nucleus, plastid | 20.9 | 35.77 |
| CDX89417 | Canola | nucleus | 16.03 | 35.06 |
| CDY50201 | Canola | nucleus, plastid | 28.15 | 34.75 |
| Bra019159.1-P | Field mustard | nucleus, plastid | 28.15 | 34.75 |
| AT4G25515.1 | Thale cress | nucleus, plastid | 28.27 | 34.74 |
| VIT_16s0100g00500.t01 | Wine grape | plastid | 35.51 | 34.61 |
| KRH09131 | Soybean | nucleus, plastid | 35.63 | 34.52 |
| CDY54085 | Canola | nucleus, plastid | 28.74 | 34.33 |
| CDY52362 | Canola | nucleus | 28.03 | 34.3 |
| CDY30691 | Canola | nucleus | 30.52 | 33.91 |
| KRH09132 | Soybean | plastid | 35.27 | 33.79 |
| GSMUA_Achr2P03310_001 | Banana | nucleus | 31.95 | 33.33 |
| AT4G25520.1 | Thale cress | plastid | 29.33 | 33.02 |
| VIT_02s0025g04390.t01 | Wine grape | vacuole | 26.84 | 32.9 |
| Bra010458.1-P | Field mustard | nucleus, plastid | 23.52 | 32.84 |
| CDX92714 | Canola | cytosol | 20.55 | 32.52 |
| PGSC0003DMT400037024 | Potato | plastid | 34.92 | 32.1 |
| AT5G62090.1 | Thale cress | nucleus | 31.0 | 31.99 |
| Bra013897.1-P | Field mustard | nucleus | 14.73 | 31.08 |
| Bra029289.1-P | Field mustard | nucleus | 23.28 | 29.65 |
| TraesCS4D01G101500.1 | Wheat | nucleus, plastid | 23.04 | 21.37 |
| TraesCS4D01G101700.1 | Wheat | nucleus, plastid | 23.16 | 20.83 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G146100.2 | EnsemblPlantsGene:TraesCS7D01G146100 | InterPro:LIM-bd/SEUSS | ncoils:Coil | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF12 |
| PFAM:PF01803 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7D:+:93501665..93506900
Molecular Weight (calculated)
93091.0 Da
IEP (calculated)
9.306
GRAVY (calculated)
-0.746
Length
842 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAPRSNLG LVPRDMNGSL PVSTTNSSGP SIGVSSLVTD GNSSLSGGAQ FQQSTSMNAD SFTRLPASPM SFSSNNISGS SVIDGSIMQQ SPPQEQMQKR
101: RASSVTSQPV IDAAAAFHAQ KKPRVDIRQD DILQQQLIQQ LLQGQSSLHL QGQHNPQLQA LIRQHKLAQI QQQQQHQLSQ QFPQHQHSQV GIPRQPQLRP
201: PLAQPGIQLA GPVRTPVESG LCSRRLMQYL YHKRYRPDNN PITYWRKLID EYFAPRSRER WCVSSYEKPG NTSAAIPQTS PGTWRCDICN THSGKGYEAT
301: SEILPRLCQI RFDHGVKDEY LFLDMPNEYR LPNGLLLLEH AKVVQKSIYE HQHVTHEGQL RIIFTPELKI MSWEFCSRKH DEYVTRKFLT DQVTHMLRAT
401: QNYQATVTKN GPAGLSNDEA QNACNQFASA SRQLAKNIDH HSLNEHGLSK RYVRCLQISE VVNHMKDLIE FSHKNKLGPI EGLKNYPKQT AGPKLTVQNL
501: HDSKAVKTEI SPHVNNEVPG VGAISNNPQN PAAQSNYQHM LRSSSANQLL QQEASQNAAA MNSYQNMFRS SSANQGLLQQ EASQNAAALN NYQNMLRGSS
601: PNQSLLQQEA SSTFKGPTAV HSGIQLEASR SFRAAQLGQF QHPMSFQQGM PQHQHNNFQG LGASPQFQQH VINQLLQEAK NTNSRALAHQ QQQQQHHQQQ
701: QQQHHQQQQQ QQQQQQQHQQ QQQSPSTPNA NGGLASGAAV ANIAASGEQA QHMNNGAAKG AVLMGMTGPS NLINSGARMV QRSSSFKSVS SNPAASGGNA
801: ATPKAESVHD MDDLEHLISH ELVESGLFMG EQPGDGGFSW NI
101: RASSVTSQPV IDAAAAFHAQ KKPRVDIRQD DILQQQLIQQ LLQGQSSLHL QGQHNPQLQA LIRQHKLAQI QQQQQHQLSQ QFPQHQHSQV GIPRQPQLRP
201: PLAQPGIQLA GPVRTPVESG LCSRRLMQYL YHKRYRPDNN PITYWRKLID EYFAPRSRER WCVSSYEKPG NTSAAIPQTS PGTWRCDICN THSGKGYEAT
301: SEILPRLCQI RFDHGVKDEY LFLDMPNEYR LPNGLLLLEH AKVVQKSIYE HQHVTHEGQL RIIFTPELKI MSWEFCSRKH DEYVTRKFLT DQVTHMLRAT
401: QNYQATVTKN GPAGLSNDEA QNACNQFASA SRQLAKNIDH HSLNEHGLSK RYVRCLQISE VVNHMKDLIE FSHKNKLGPI EGLKNYPKQT AGPKLTVQNL
501: HDSKAVKTEI SPHVNNEVPG VGAISNNPQN PAAQSNYQHM LRSSSANQLL QQEASQNAAA MNSYQNMFRS SSANQGLLQQ EASQNAAALN NYQNMLRGSS
601: PNQSLLQQEA SSTFKGPTAV HSGIQLEASR SFRAAQLGQF QHPMSFQQGM PQHQHNNFQG LGASPQFQQH VINQLLQEAK NTNSRALAHQ QQQQQHHQQQ
701: QQQHHQQQQQ QQQQQQQHQQ QQQSPSTPNA NGGLASGAAV ANIAASGEQA QHMNNGAAKG AVLMGMTGPS NLINSGARMV QRSSSFKSVS SNPAASGGNA
801: ATPKAESVHD MDDLEHLISH ELVESGLFMG EQPGDGGFSW NI
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.