Factsheet for Bra010458.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52362	Canola	nucleus	81.09	71.08
CDY54085	Canola	nucleus, plastid	80.6	68.94
AT4G25515.1	Thale cress	nucleus, plastid	66.0	58.1
Bra019159.1-P	Field mustard	nucleus, plastid	60.86	53.81
Bra013897.1-P	Field mustard	nucleus	35.16	53.13
AT4G25520.1	Thale cress	plastid	63.18	50.94
KRG88471	Soybean	nucleus, plastid	28.19	39.72
Bra029289.1-P	Field mustard	nucleus	39.8	36.31
Solyc03g026190.2.1	Tomato	plastid	32.34	34.57
KRH38604	Soybean	nucleus	43.62	32.55
KRH09131	Soybean	nucleus, plastid	46.27	32.11
VIT_16s0100g00500.t01	Wine grape	plastid	44.78	31.25
KRH09132	Soybean	plastid	44.94	30.83
KRH38603	Soybean	plastid	26.7	30.32
GSMUA_Achr1P16220_001	Banana	nucleus	34.99	30.19
PGSC0003DMT400037024	Potato	plastid	44.44	29.26
GSMUA_Achr1P07930_001	Banana	nucleus	37.31	28.34
KXG34470	Sorghum	nucleus, plastid	34.66	28.32
Zm00001d018890_P006	Maize	nucleus, plastid	33.83	27.09
GSMUA_Achr10P...	Banana	nucleus	34.33	26.71
Zm00001d045516_P006	Maize	nucleus, plastid	33.83	26.32
TraesCS7A01G520700.1	Wheat	nucleus	34.83	26.02
KXG19170	Sorghum	plastid	33.66	25.99
Os06t0126000-02	Rice	cytosol, nucleus	35.16	25.79
TraesCS7B01G437100.1	Wheat	plastid	34.33	25.65
Zm00001d035990_P002	Maize	plastid	33.17	25.64
TraesCS7D01G510400.2	Wheat	nucleus	34.49	23.94
GSMUA_Achr2P03310_001	Banana	nucleus	32.01	23.92
TraesCS7D01G146100.2	Wheat	nucleus, plastid	32.84	23.52
HORVU7Hr1G115870.4	Barley	plastid	31.34	23.48
TraesCS7D01G050000.5	Wheat	nucleus, plastid	33.17	23.34
TraesCS7A01G144600.3	Wheat	nucleus, plastid	33.0	23.27
TraesCS4A01G441500.1	Wheat	nucleus, plastid	32.84	22.94
TraesCS7A01G054900.2	Wheat	nucleus, plastid	33.33	22.92
TraesCS7B01G047100.4	Wheat	plastid	32.17	22.8
HORVU7Hr1G029650.10	Barley	plastid	32.67	22.54
HORVU7Hr1G010050.2	Barley	nucleus, plastid	32.34	22.29
Bra036931.1-P	Field mustard	nucleus, plastid	27.36	22.24
Bra032192.1-P	Field mustard	nucleus, plastid	28.36	22.09
GSMUA_Achr7P05870_001	Banana	nucleus	7.13	15.04

Protein Annotations

EnsemblPlants:Bra010458.1	EnsemblPlants:Bra010458.1-P	EnsemblPlantsGene:Bra010458	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12
PFAM:PF01803	SEG:seg	UniParc:UPI0002545A38	UniProt:M4D1V8	MapMan:35.1	:

Description

AT4G25515 (E=2e-196) SLK3 | SLK3 (SEUSS-LIKE 3); transcription regulator

Coordinates

chrA08:-:14615442..14618416

Molecular Weight (calculated)

66921.6 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.737

Length

603 amino acids

Sequence
(BLAST)

001: MNKPGVDSTT DGAGHEALNM QRNSGINNMR IPTPTPMSFS SNNINIPGSL VIDGSASMQQ HLSQQQQQQA GQSSVPMREN DYSHVDKKPR IEENCISYWR
101: KFVAEYFSPR AKQRLCLSQY ESAGHHALGM FQQAAPDMWQ CDLCSTKSGK GFEATFDVLA RLIEIKFASG IIDELLYLDH PREHRFTNGL MMLEYRKAVQ
201: ETVHEQFRVV REGHLRIIFS QDLKILTWEF CARRHEELLL RRLIAPQVNQ LLQVAQKCQN TISESGSEGV SQQDLQSNSN MVLGAGRQLA KFMELQSLND
301: LGYPKRYIRT LQISEVVKSM KDLMNFTGEH KVGPIEGLRR LLEQTATSKL QRQKVQEMEH MGNNGAMNGS AQAQMALTPG TMNGLIGNNN SNSSNSNNHH
401: QLVGRGAMNG SAQAAAALTN YQSMLMRQNA MNNPNSNAVK EEGFSTQNPT QSPSSSSHQR QNLATPGFPS SPQMQQQQQQ QQRNMNGPPH HLQPPHSHGN
501: NQGQQMLNRL LQEISENGPS LQQQQAFSGQ SGGGNNNAER NPAASTSSIS GGGGRVPSRN NSFKAVVSNN NNHHLPEDLS IPELSHDFSE DAFFNNSDIY
601: GSL

Best Arabidopsis Sequence Match ( AT4G25520.1 )
(BLAST)

001: MNRTVVSGAV ESSFSLTDAV GTEALNMQRS SGINNNMRIP TSPMSFSSNS VNIPGSLVLD GSAASMQHLP QQQQQQLLQQ QTGQGSVPMR ENNYSHVDKK
101: PRLEVKQEDM LQQQILQQLI QRQDPTGRNP QMQALLQQQR LRQHQQMLQS MSPSQRLQLQ QQQQLRQQLQ QQGTQQIPPN VRPYEVGVCA RKLMMYLYHL
201: QQRPAENCIT YWRKFVAEYF SPRAKQRLCL SQYESAGHHA LGMFPQAAPD MWQCDLCGTK SGKGFEATFD VLARLIEIKF ASGIIDELLY LDHPRENRFP
301: NGLMMLEYRK AVQETVHEQF RVVREGHLRI IFSQDLKILS WEFCARRHEE LLLRRLIAPQ VNQLLQVAQK CQSTISESGS EGVSQQDLQS NSNMVLGAGR
401: QLAKFMELQS LNDLGYPKRY IRTLQISEVV KSMKDLMNFT GEQKIGPIEG LKRLLEQTVT VKLQKQKMQE MEQFGNNGAI NGPVQAQMVL TSGTMNGSTG
501: NNTNNHHQIV GRGAMSGPAE GQMVISSGTV SGATANNNSN NHNQIVGRGA MNGSAQAAAA LTNYQSMLMR QNAMNNPNSN TGKQEGFSSQ NPTPNSNQSP
601: SSSSQQRHNL VTGGFPNSPQ MQQQQRTMNG PTNILPQNHP HQLQSPHSHG NTPEQQMLHQ LLQEMSENGG SVQQQQAFSG QSGSNSNAER NTTASTSNIS
701: GGGRAPSRNN SFKAASNNNL HFSEDISITD HDFSEDGFFN NNDIYGGL

Arabidopsis Description

SLK1Probable transcriptional regulator SLK1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVM7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.