Factsheet for VIT_16s0100g00500.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g00420.t01
VIT_12s0028g02150.t01
VIT_18s0001g08380.t01
VIT_19s0014g02200.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	VIT_07s0005g00420.t01	AT2G47700.1	21798944
AT5G62090.1	VIT_12s0028g02150.t01	AT3G58630.1	21798944
AT5G62090.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944
AT5G62090.1	VIT_19s0014g02200.t01	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88471	Soybean	nucleus, plastid	38.19	77.1
Solyc03g026190.2.1	Tomato	plastid	50.0	76.6
KRH38603	Soybean	plastid	44.91	73.07
KRH09131	Soybean	nucleus, plastid	71.64	71.23
KRH38604	Soybean	nucleus	65.74	70.3
KRH09132	Soybean	plastid	68.98	67.8
PGSC0003DMT400037024	Potato	plastid	63.31	59.72
AT5G62090.1	Thale cress	nucleus	52.43	55.51
CDY30691	Canola	nucleus	46.41	52.9
CDY52362	Canola	nucleus	41.09	51.6
CDY50201	Canola	nucleus, plastid	40.51	51.32
Bra019159.1-P	Field mustard	nucleus, plastid	40.51	51.32
AT4G25515.1	Thale cress	nucleus, plastid	40.62	51.24
GSMUA_Achr7P05870_001	Banana	nucleus	16.9	51.05
CDX92713	Canola	nucleus, plastid	40.39	50.8
GSMUA_Achr1P16220_001	Banana	nucleus	40.97	50.64
CDY54085	Canola	nucleus, plastid	41.09	50.35
Bra029289.1-P	Field mustard	nucleus	38.43	50.23
CDX89417	Canola	nucleus	21.99	49.35
VIT_02s0025g04390.t01	Wine grape	vacuole	38.54	48.47
CDY57709	Canola	nucleus, plastid	27.31	47.97
GSMUA_Achr10P...	Banana	nucleus	41.78	46.58
AT4G25520.1	Thale cress	plastid	40.05	46.26
GSMUA_Achr1P07930_001	Banana	nucleus	42.13	45.84
Bra010458.1-P	Field mustard	nucleus, plastid	31.25	44.78
CDX92714	Canola	cytosol	26.97	43.8
Bra013897.1-P	Field mustard	nucleus	20.14	43.61
GSMUA_Achr2P03310_001	Banana	nucleus	38.43	41.14
KXG34470	Sorghum	nucleus, plastid	34.72	40.65
KXG19170	Sorghum	plastid	36.11	39.95
Zm00001d045516_P006	Maize	nucleus, plastid	35.42	39.48
Os06t0126000-02	Rice	cytosol, nucleus	37.5	39.42
Zm00001d035990_P002	Maize	plastid	35.53	39.36
TraesCS7A01G520700.1	Wheat	nucleus	36.57	39.16
TraesCS7B01G437100.1	Wheat	plastid	36.57	39.16
Zm00001d018890_P006	Maize	nucleus, plastid	32.87	37.72
HORVU7Hr1G115870.4	Barley	plastid	34.84	37.39
TraesCS7D01G510400.2	Wheat	nucleus	36.46	36.25
TraesCS7D01G146100.2	Wheat	nucleus, plastid	34.61	35.51
TraesCS7A01G144600.3	Wheat	nucleus, plastid	34.84	35.2
HORVU7Hr1G010050.2	Barley	nucleus, plastid	35.53	35.09
TraesCS7B01G047100.4	Wheat	plastid	34.38	34.9
HORVU7Hr1G029650.10	Barley	plastid	35.19	34.78
TraesCS7D01G050000.5	Wheat	nucleus, plastid	34.38	34.66
TraesCS4A01G441500.1	Wheat	nucleus, plastid	34.49	34.53
TraesCS7A01G054900.2	Wheat	nucleus, plastid	34.26	33.75
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	30.09	28.48
VIT_04s0044g01260.t01	Wine grape	plastid	27.78	27.52

Protein Annotations

ArrayExpress:VIT_16s0100g00500	EMBL:FN596000	EnsemblPlants:VIT_16s0100g00500.t01	EnsemblPlantsGene:VIT_16s0100g00500	EntrezGene:100265879	EntrezGene:LOC100265879
InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803	ProteinID:CCB56468	ProteinID:CCB56468.1
RefSeq:XP_002279763	RefSeq:XP_002279763.2	SEG:seg	TIGR:TC53329	TIGR:TC67782	UniParc:UPI0002108828
UniProt:F6HP62	wikigene:100265879	wikigene:LOC100265879	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr16:+:15986550..15992224

Molecular Weight (calculated)

94652.2 Da

IEP (calculated)

8.413

GRAVY (calculated)

-0.608

Length

864 amino acids

Sequence
(BLAST)

001: MAPSRVAGSL AQSSSSSGIF FQGDGQSQAV VNSHMSSSFG NSSNSIPGTG RSNLGPVSGD VNNTVLNSVA NSGPSVGASS LVTDANSALS GGPHLQRSAS
101: INTESYMRLP ASPMSFSSNN ISISGSSVMD GSSVVQQSSH QDPSSQQANQ SQQHQGASSA TSLPTSQAGQ VSLSMNPRVP ASFIQEPNNP SQVHKKARLD
201: IKQEDILPQQ IVQQILQRQD PMQLQGHNPQ FQSLIQQQRL RQQQQMLQSM PQQMQRAHLQ QQHQQQQQQQ LQLRHHLQQQ GMQPISAMKR PYDSGVCARR
301: LMQYLYHQRQ PDKTIAYWRK FVAEYYSPRA KKRWCLSLYD NVGNHALGVF PQAAMDAWHC EICNSKSGRG FEATFEVLPR LNEIKFGSGV IDELLFLDLP
401: RECRFSSGIM MLEYGKAVQE SVYEQLRVVR EGQLRIIFTP DLKILSWEFC AQHHEELLPR RLVAPQVNQL VQVAQKCQST IAESGSDGIS QQDLQTNSNM
501: VLTAGRQLAR SLESQSLNDL GFSKRYVRCL QISEVVNSMK DLIDFCRENK VGPIDGLKSY PRHASAVKLE MQKMQEMEQL ANVQGLPTDR NTLNKLIALH
601: PGLNSHMSNN PHMVNRGALS GSAQAALALT NYQNLLMRQN SMNSNPSSLQ QEGPSSFNSS NQSPSSTFQG PATLISGSMH NLPGSGFSSP HLPPQQQQQQ
701: QQQQQQQQQR SLNPSSLLQQ NPGLSSQSSQ ALQQQMIQQM LQEMTNNCGP GMQQQSLSGQ NVNGSMTRSG MGFGNNSAAA TVASPNLSGS IGGPPLSKSN
801: SFKGPLNSDS SAGGANSGFN QKASDLAHNL HLSDEMVQDI AREFPDNGFF NSDLEDNMSY GWKA

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.